# MMLSUM Exp_Change = 0.6 log odds matrix (in 1/4-bit units) # Default Gap-open = 21.6892 # Default Gap-extn = 2.9142 # Notes: Matrix derived from MMLSUM (t = 101) Markov Matrix # File generated on: 2020/10/02 12:50:15 A R N D C Q E G H I L K M F P S T W Y V A 8.7567 -3.0689 -3.8153 -4.9403 -1.1744 -1.5887 -1.8806 -0.8872 -4.2793 -3.3942 -2.9638 -2.3991 -2.0799 -4.9949 -2.1711 0.8880 -1.4948 -6.4876 -4.9189 -0.7236 R -3.0689 12.0096 -1.4512 -3.1475 -6.4366 1.5123 -0.3628 -5.6939 0.2920 -6.3918 -4.9256 4.4014 -3.5337 -7.2548 -4.4509 -2.1504 -2.6461 -4.6735 -3.1033 -6.6881 N -3.8153 -1.4512 12.2669 3.0634 -6.3350 -0.1456 -1.1800 -1.0789 0.2412 -8.0352 -8.7706 0.0766 -5.5753 -7.6444 -3.3449 1.0319 -0.8212 -8.1922 -3.0152 -7.7342 D -4.9403 -3.1475 3.0634 12.1206 -10.1176 -0.7981 3.1370 -2.4258 -2.6824 -11.8413 -10.9433 -1.0238 -8.7299 -10.7822 -3.2268 -0.5389 -2.2396 -9.9888 -7.4194 -10.9057 C -1.1744 -6.4366 -6.3350 -10.1176 20.3208 -7.8679 -10.3544 -7.7598 -5.3036 -3.2753 -2.4621 -9.2082 -2.4592 -2.3775 -8.7818 -1.7170 -3.4326 -4.6139 -3.3852 -1.7263 Q -1.5887 1.5123 -0.1456 -0.7981 -7.8679 11.6732 3.1413 -5.4914 1.0942 -6.8966 -4.9738 2.0884 -1.5535 -7.1333 -2.9286 -0.8414 -1.1886 -6.6026 -3.5091 -5.6269 E -1.8806 -0.3628 -1.1800 3.1370 -10.3544 3.1413 10.5935 -5.5895 -2.2996 -8.5115 -7.8613 1.4193 -5.5138 -9.6633 -2.7017 -1.3974 -1.8024 -9.3972 -6.1676 -6.5838 G -0.8872 -5.6939 -1.0789 -2.4258 -7.7598 -5.4914 -5.5895 12.0369 -5.0219 -10.6552 -9.7690 -5.0725 -7.5243 -8.1578 -4.0383 -1.0119 -4.4349 -9.3280 -8.2736 -9.2647 H -4.2793 0.2920 0.2412 -2.6824 -5.3036 1.0942 -2.2996 -5.0219 16.2315 -7.3215 -5.5173 -1.2964 -4.6122 -3.1474 -5.1318 -2.4889 -3.4211 -2.6795 2.0091 -6.7020 I -3.3942 -6.3918 -8.0352 -11.8413 -3.2753 -6.8966 -8.5115 -10.6552 -7.3215 9.9907 3.2151 -6.6280 2.1863 0.0261 -6.8290 -6.4324 -3.2303 -4.8693 -4.4619 5.0376 L -2.9638 -4.9256 -8.7706 -10.9433 -2.4621 -4.9738 -7.8613 -9.7690 -5.5173 3.2151 9.0888 -6.6491 3.7242 1.6618 -7.3805 -6.9938 -4.5120 -3.0135 -3.1054 1.2507 K -2.3991 4.4014 0.0766 -1.0238 -9.2082 2.0884 1.4193 -5.0725 -1.2964 -6.6280 -6.6491 10.5582 -3.9988 -9.0320 -2.4740 -1.3426 -1.3478 -8.6702 -5.5690 -7.0192 M -2.0799 -3.5337 -5.5753 -8.7299 -2.4592 -1.5535 -5.5138 -7.5243 -4.6122 2.1863 3.7242 -3.9988 14.4268 0.4192 -7.5183 -3.7561 -2.6162 -2.0326 -1.6032 -0.2472 F -4.9949 -7.2548 -7.6444 -10.7822 -2.3775 -7.1333 -9.6633 -8.1578 -3.1474 0.0261 1.6618 -9.0320 0.4192 13.1602 -6.8950 -6.2128 -4.9927 2.3238 4.9970 -1.3257 P -2.1711 -4.4509 -3.3449 -3.2268 -8.7818 -2.9286 -2.7017 -4.0383 -5.1318 -6.8290 -7.3805 -2.4740 -7.5183 -6.8950 14.8315 -1.6341 -3.0945 -8.7291 -6.4796 -5.1008 S 0.8880 -2.1504 1.0319 -0.5389 -1.7170 -0.8414 -1.3974 -1.0119 -2.4889 -6.4324 -6.9938 -1.3426 -3.7561 -6.2128 -1.6341 9.2247 2.8345 -6.9546 -4.6627 -5.0019 T -1.4948 -2.6461 -0.8212 -2.2396 -3.4326 -1.1886 -1.8024 -4.4349 -3.4211 -3.2303 -4.5120 -1.3478 -2.6162 -4.9927 -3.0945 2.8345 10.1111 -5.9169 -3.9759 -1.1481 W -6.4876 -4.6735 -8.1922 -9.9888 -4.6139 -6.6026 -9.3972 -9.3280 -2.6795 -4.8693 -3.0135 -8.6702 -2.0326 2.3238 -8.7291 -6.9546 -5.9169 20.4446 3.5157 -6.2551 Y -4.9189 -3.1033 -3.0152 -7.4194 -3.3852 -3.5091 -6.1676 -8.2736 2.0091 -4.4619 -3.1054 -5.5690 -1.6032 4.9970 -6.4796 -4.6627 -3.9759 3.5157 14.1552 -3.8786 V -0.7236 -6.6881 -7.7342 -10.9057 -1.7263 -5.6269 -6.5838 -9.2647 -6.7020 5.0376 1.2507 -7.0192 -0.2472 -1.3257 -5.1008 -5.0019 -1.1481 -6.2551 -3.8786 9.1639