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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:19:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ALAD.html
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#====================================
# Aligned_structures: 2
#   1: 1aw5.pdb
#   2: 1b4ka.pdb
#
# Length:        346
# Identity:      110/346 ( 31.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    110/346 ( 31.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/346 ( 13.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aw5.pdb                1  HTAEFLETEPTEIS--S-VLAGGYNHPLLRQWQSERQLTKN-LIFPLFISDNPDDFTEID   56
1b4ka.pdb               1  --------------YPYTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIP   46
                                              L         R    E  LT   LI P F  D       I 

1aw5.pdb               57  SAPNINRIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIRF  116
1b4ka.pdb              47  SMPGVERLSIDQLLIEAEEWVALGIPALALFPVT-PVEKKSLDAAEAYNPEGIAQRATRA  105
                           S P   R     L       VA G     LF V      K      A  P G      R 

1aw5.pdb              117  IREKFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAP  176
1b4ka.pdb             106  LRERFPELGIITDVALDPFTTHGQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP  165
                            RE FPEL II DV L   T HG  G L DDG      S   L   A   A AGA  VAP

1aw5.pdb              177  SD-IDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPA------------------C  217
1b4ka.pdb             166  SDMMDGRIGAIREALESAGH-TNVRIMAYSAKYASAYYG--PFRDAVGSASNLGKGNKAT  222
                           SD  DGRI  I   L  A          Y AK     YG                     

1aw5.pdb              218  YQLPPAGRGLARRALERD-SEGADGIIVKPSTFYLDIVRDASEICKDLPICAYHVSGEYA  276
1b4ka.pdb             223  YQMDPANSDEALHEVAADLAEGADMVMVKPGMPYLDIVRRVKDEFR-APTFVYQVSGEYA  281
                           YQ  PA    A      D  EGAD   VKP   YLDIVR         P   Y VSGEYA

1aw5.pdb              277  -LHAAAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLDE  321
1b4ka.pdb             282  MHMGAIQNGWLAE-SVILESLTAFKRAGADGILTYFAKQAAEQLRR  326
                               A   G         ES   F RAGA  I TY A      L  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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