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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:31:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ARM.html
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#====================================
# Aligned_structures: 3
#   1: 1bk5b.pdb
#   2: 1iala.pdb
#   3: 3bct.pdb
#
# Length:        498
# Identity:       43/498 (  8.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    236/498 ( 47.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          117/498 ( 23.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bk5b.pdb               1  ---------LPQMTQQLNSDDMQEQLSATVKFRQILSRE-HRPPIDVVIQAGVVPRLVEF   50
1iala.pdb               1  -NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSRE-KQPPIDNIIRAGLIPKFVSF   58
3bct.pdb                1  Q--------VSAIVRTQNTNDVETARCTAGTLHNLSHHRE---GLLAIFKSGGIPALVKL   49
                                    v  iv   Nsnd e ql at   r llsre    pid ii aG iP lV f

1bk5b.pdb              51  MRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWA  108
1iala.pdb              59  LGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWA  116
3bct.pdb               50  -G--SPVDSVLFYAITTLHNLLLHQEGA-KAVRLAGGLQKV-ALLNK-TNVKFLAITTDC  103
                            g        qfeaawaLtNiasgts q KaVvdaga p f  LL     v   eqa wa

1bk5b.pdb             109  LGNVAGDSTDYRDYVLQCNAMEPILGLF-NS-----NKPSLIRTATWTLSNLCRGKKPQP  162
1iala.pdb             117  LGNIAGDGSAFRDLVIKHGAIDPLLALLAV-PDLSTLACGYLRNLTWTLSNLCRNKNPAP  175
3bct.pdb              104  LQILAYGNQESKLIILASGGPQALVNIR-TY-----TYEKLLWTTSRVLKVLSVCSS---  154
                           Lgn Agd    rd vl  ga  pll l             llrt twtLsnLcr k    

1bk5b.pdb             163  DWSVVS--QALPTLAKLIYSMDTETLVDACWAISYLSDG-PQEAIQAVIDV-RIPKRLVE  218
1iala.pdb             176  PLDAVE--QILPTLVRLLHHNDPEVLADSCWAISYLTDG-PNERIEMVVKK-GVVPQLVK  231
3bct.pdb              155  NKPAIVEAGG-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------EGEGLLGTLVQ  207
                              av   q  ptL  ll   d e l d cWaisyLsDg p e         g    LV 

1bk5b.pdb             219  LLSHESTLVQTPALRAVGNIVTGNDLQT--------------------QVVINAGVLPAL  258
1iala.pdb             232  LLGATELPIVTPALRAIGNIVTGTDEQT--------------------QKVIDAGALAVF  271
3bct.pdb              208  LLGSDDINVVTCAAGILSNLTCNNYKNKVCQVGGIEALVRTVLRAGDREDITE-PAICAL  266
                           LLg     vvTpAlra gNivtgnd qt                    q vi  gal al

1bk5b.pdb             259  RLLLSS--------------------------PKENIKKEACWTISNITAGNTEQIQAVI  292
1iala.pdb             272  PSLLTN--------------------------PKTNIQKEATWTMSNITAGRQDQIQQVV  305
3bct.pdb              267  RHLTSRHQEAEAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLR  325
                           r Lls                           pk ni Kea wtisNitag   qiq v 

1bk5b.pdb             293  DANLIPPLVKLLEVA--------EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP  344
1iala.pdb             306  NHGLVPFLVGVLSKA--------DFKTQKEAAWAITNYTSGG--TVEQIVYLVHCGIIEP  355
3bct.pdb              326  EQGAIPRLVQLLVRAHQDTQRGVREEIVEGCTGALHILAR-D---VHNRIVIRGLNTIPL  381
                             gliP LV lL  A          kt kea wAi n  s g   v  i ylv  g I p

1bk5b.pdb             345  LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN  404
1iala.pdb             356  LMNLLSAKDTKIIQVILDAISNIFQAAEKLG----ET-EKLSIMIEECGGLDKIEALQRH  410
3bct.pdb              382  FVQLLYSPIENIQRVAAGVLCELAQD------------KEAAEAIEAEGATAPLTELLHS  429
                           l  LL   d  Ii V ldal ni q              e a  IE  Gg  ki  lq  

1bk5b.pdb             405  ENDKIYEKAYKIIETYFG  422
1iala.pdb             411  ENESVYKASLNLIEKYF-  427
3bct.pdb              430  RNEGVATYAAAVLFR---  444
                           eNe vy  a   ie    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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