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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:43:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Apocytochrome_F.html
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#====================================
# Aligned_structures: 2
#   1: 1cfma.pdb
#   2: 1hcz.pdb
#
# Length:        252
# Identity:      175/252 ( 69.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    175/252 ( 69.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            3/252 (  1.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cfma.pdb               1  YPVFAQQNYANPREANGRIVCANCHLAQKAVEIEVPQAVLPDTVFEAVIELPYDKQVKQV   60
1hcz.pdb                1  YPIFAQQNYENPREATGRIVCANCHLASKPVDIEVPQAVLPDTVFEAVVKIPYDMQLKQV   60
                           YP FAQQNY NPREA GRIVCANCHLA K V IEVPQAVLPDTVFEAV   PYD Q KQV

1cfma.pdb              61  LANGKKGDLNVGMVLILPEGFELAPPDRVPAEIKEKVGNLYYQPYSPEQKNILVVGPVPG  120
1hcz.pdb               61  LANGKKGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPNKKNILVIGPVPG  120
                           LANGKKG LNVG VLILPEGFELAPPDR   E KEK GNL  Q Y P  KNILV GPVPG

1cfma.pdb             121  KKYSEMVVPILSPDPAKNKNVSYLKYPIYFGGNRGRGQVYPDGKKSNNTIYNASAAGKIV  180
1hcz.pdb              121  QKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAGGIIS  180
                            KYSE   PIL PDPA NK V  LKYPIY GGNRGRGQ YPDG KSNNT YNA A G I 

1cfma.pdb             181  AITALSEKKGGFEVSIEK-ANGEVVVDKIPAGPDLIVKEGQTVQADQPLTNNPNVGGFGQ  239
1hcz.pdb              181  KILRKE--KGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQ  238
                            I      KGG E  I    N   V D IP G  L V EG     DQPLT NPNVGGFGQ

1cfma.pdb             240  AETEIVLQNPAR  251
1hcz.pdb              239  GDAEIVLQDPLR  250
                              EIVLQ P R


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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