################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 18:49:08 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Asn_synthase_NC.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1ct9a.pdb # 2: 1jgta.pdb # # Length: 570 # Identity: 86/570 ( 15.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 86/570 ( 15.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 153/570 ( 26.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1ct9a.pdb 1 ------ASIFGVFDIKTDAVELRKKALELSRLMRH------RGPDWSGIY-AS--D--NA 43 1jgta.pdb 1 PVLPAAFGFLASART--------------------GGGPVFATRGSHTDIDT-PQGERSL 39 1ct9a.pdb 44 ILAHERLSIVDVNAG----AQPLYNQQK----THVLAVNGEIYNHQALRAEYGDRYQFQT 95 1jgta.pdb 40 AATLVHAPS------VAPDRAVARS---LTGAPTTAVLAGEIYNRDELLSVLPA-GPAP- 88 GEIYN L 1ct9a.pdb 96 GSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQL 155 1jgta.pdb 89 EGDAELVLRLLERYDLHAFRLVNGRFATVVRTG--DRVLLATDHAGSVPLYTCVA-PGEV 145 D E L L G FA D L DH G PLY G 1ct9a.pdb 156 YVASEMKALV-PV-------------CRTIKEFPAGSYLWSQD-----GEIRSYYHRDWF 196 1jgta.pdb 146 RASTEAKALAAHPKGFPLADARRVAGLTGVYQVPAGAVMDID-LGSGTAVTHRTWT---- 200 E KAL PAG 1ct9a.pdb 197 DYDAVKD----N-VT----DKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITK 247 1jgta.pdb 201 -------PGLSRRILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAH 253 R ALE V V LSGG DSS A 1ct9a.pdb 248 KYA--LHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVT 305 1jgta.pdb 254 RAAGELDTVSMGTDTSNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPD 313 A L G S A V HL T H EI E L E D 1ct9a.pdb 306 TIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAP---NAKELHEETVRKLL 362 1jgta.pdb 314 IIEYLLPLTALYRALD-GPERRILTGYGADIPLGGMH------REDRLPALDTVLAHDMA 366 I P R L G G D GG L 1ct9a.pdb 363 ALHMYDCAR--ANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKM-CKMEKHILRECFEA 419 1jgta.pdb 367 TFDGLN---EMSPVLSTLAGHWTTHPYWDREVLDLLVSLEAGLKRRHGRDKWVLRAAMAD 423 G P D LD K K LR 1ct9a.pdb 420 YLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQV--SDQQLETARFRFPYNTPT--SKEA 475 1jgta.pdb 424 ALPAETVNRPKL----------S-SFSRLLLDHGVAEDR---VHEAKRQ-----VVRELF 464 LPA R K D 1ct9a.pdb 476 YLYREI--------FEELFPLPSAAECVPG 497 1jgta.pdb 465 DLTVGGGRHPSEVDTDDVVR-SVADRT--- 490 L A #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################