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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:19:54 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Bac_DNA_binding.html
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#====================================
# Aligned_structures: 4
#   1: 1huuc1.pdb
#   2: 1ihfa.pdb
#   3: 1ihfb.pdb
#   4: 1wtua.pdb
#
# Length:        115
# Identity:        8/115 (  7.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     25/115 ( 21.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/115 ( 39.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1huuc1.pdb              1  -MNKTELINAVAETSG--LSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRER--   55
1ihfa.pdb               1  ALTKAEMSEYLFDKLG--LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDK-N   57
1ihfb.pdb               1  -MTKSELIERLATQQS-HIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYR-A   57
1wtua.pdb               1  -MNKTELIKAIAQDT-E-LTQVSVSKMLASFEKITTETVAKGDKVQLTGFLNIKPVARQA   57
                            m K Eli   a      l        v          l  G  v l GFgnf    r  

1huuc1.pdb             56  ---------------------------KVPAFKPGKALKDAVK------------   71
1ihfa.pdb              58  Q---RPGRN-----PKTGEDIPITA-RRVVTFRPGQKLKSRVENAS------PK-   96
1ihfb.pdb              58  P---RTGRN-----PKTGDKVELEG-KYVPHFKPGKELRDRANIY---------G   94
1wtua.pdb              58  RKGF--N-PQTQEA-----L-E-IAPSVGVSVKPGESLKKAAEGLKYEDFAK---   99
                                                       v  fkPG  Lk                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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