################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 05:29:09 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CH.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: 1aa2.pdb # 2: 1aoa1.pdb # 3: 1aoa2.pdb # 4: 1bhda.pdb # # Length: 157 # Identity: 4/157 ( 2.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 16/157 ( 10.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 62/157 ( 39.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1aa2.pdb 1 ----K--------SAKDALLLWCQMKTAGYP-----NVNI----HNFTTSWRDGMAFNAL 39 1aoa1.pdb 1 --YSE--------EEKYAFVNWINKALENDPDCRHVIPMNPNTD-DLFKAVGDGIVLCKM 49 1aoa2.pdb 1 -----TLEELMKLSPEELLLRWANFHLENSG-----WQKI----NNFSADIKDSKAYFHL 46 1bhda.pdb 1 LQQ-T--------NSEKILLSWVRQTTRPYS-----QVNV----LNFTTSWTDGLAFNAV 42 ll W nf Dg a 1aa2.pdb 40 IHKHRPD------L-----IDFDKLKK------SNAHYNLQNAFNLAEQHLGL-TKLLDP 81 1aoa1.pdb 50 INLSVPD------T-----IDERAINKKKLTP-FIIQENLNLALNSASAIG-CHVVNIGA 96 1aoa2.pdb 47 LNQIA--PKGQKEGEPRIDINMSGFN------ETDDLKRAESMLQQADKLG-C-RQFVTP 96 1bhda.pdb 43 LHRHKPD------L-----FSWDKVVK------MSPIERLEHAFSKAQTYLGI-EKLLDP 84 i l a A p 1aa2.pdb 82 EDISVDHPDEKSIITYVVTYYHYFSKM---------- 108 1aoa1.pdb 97 EDLRA--GKPHLVLGLLWQIIKIGLFADIELSRNEAL 131 1aoa2.pdb 97 ADVVS--GNPKLNLAFVANLFN--------------- 116 1bhda.pdb 85 EDVAVRLPDKKSIIMYLTSLFEVL------------- 108 eD k #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################