################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:08:40 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/COX1.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1ar1a.pdb
#   2: 2occa.pdb
#
# Length:        540
# Identity:      274/540 ( 50.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    274/540 ( 50.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           37/540 (  6.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ar1a.pdb               1  G-FFTRWFMSTNHKDIGILYLFTAGIVGLISVCFTVYMRMELQHPGVQYMCLEGARLIAD   59
2occa.pdb               1  -MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTL-LG---------   49
                             F  RW  STNHKDIG LYL      G          R EL  PG              

1ar1a.pdb              60  ASAECTPNGHLWNVMITYHGVLMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRLNNLSY  119
2occa.pdb              50  -------DDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF  102
                                       NV  T H   M FF V P   GGFGN   PL IGAPDMAFPR NN S 

1ar1a.pdb             120  WMYVCGVALGVASLLAPGGNDQMGSGVGWVLYPPLSTT--EAGYSMDLAIFAVHVSGASS  177
2occa.pdb             103  WLLPPSFLLLLASSMVE-----AGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS  157
                           W       L  AS          G G GW  YPPL      AG S DL IF  H  G SS

1ar1a.pdb             178  ILGAINIITTFLNMRAPGMTLFKVPLFAWSVFITAWLILLSLPVLAGAITMLLMDRNFGT  237
2occa.pdb             158  ILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNT  217
                           ILGAIN ITT  NM  P M     PLF WSV ITA L LLSLPVLA  ITMLL DRN  T

1ar1a.pdb             238  QFFDPAGGGDPVLYQHILWFFGHPEVYIIILPGFGIISHVISTF-AKKPIFGYLPMVLAM  296
2occa.pdb             218  TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAM  277
                            FFDPAGGGDP LYQH  WFFGHPEVYI ILPGFG ISH       KK  FGY  MV AM

1ar1a.pdb             297  AAIGILGFVVWAHHMYTAGMSLTQQAYFMLATMTIAVPTGIKVFSWIATMWGGSIEFKTP  356
2occa.pdb             278  MSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPA  337
                             IG LGF VWAHHM T GM     AYF  ATM IA PTG KVFSW AT  GG I     

1ar1a.pdb             357  MLWAFGFLFLFTVGGVTGVVLSQAPLDRVYHDTYYVVAHFHYVMSLGAVFGIFAGVYYWI  416
2occa.pdb             338  MMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWF  397
                           M WA GF FLFTVGG TG VL    LD V HDTYYVVAHFHYV S GAVF I  G   W 

1ar1a.pdb             417  GKMSGRQYPEWAGQLHFWMMFIGSNLIFFPQHFLGRQGMPRRYIDYPVEFAYWNNISSIG  476
2occa.pdb             398  PLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMG  457
                              SG          HF  MF G N  FFPQHFLG  GMPRRY DYP     WN ISS G

1ar1a.pdb             477  AYISFASFLFFIGIVFYTLFAGKRVNVPNYWNEHADTLEWTLPSPPPEHTFET-------  529
2occa.pdb             458  SFISLTAVMLMVFIIWEAFASKREVLTVD-LTT--TNLEWLNGCPPPYHTFEEPTYVNLK  514
                             IS         I          V            LEW    PPP HTFE        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################