################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 09:42:57 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ChtBD.html ################################################################################################ #==================================== # Aligned_structures: 5 # 1: 1hev.pdb # 2: 1wgta1.pdb # 3: 1wgta2.pdb # 4: 1wgta3.pdb # 5: 1wgta4.pdb # # Length: 46 # Identity: 16/ 46 ( 34.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 26/ 46 ( 56.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 6/ 46 ( 13.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1hev.pdb 1 E-QCGRQAGGKLCPNNLCCSQWGWCGSTDEYCSPDHNCQ-SNCKD- 43 1wgta1.pdb 1 --RCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKG--CQNGACWTS 42 1wgta2.pdb 1 -KRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAG--CQGGPCRAD 43 1wgta3.pdb 1 -IKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEG--CQNGACSTD 43 1wgta4.pdb 1 -KPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAG--CQSGGCDG- 42 CG qagG CpNN CCSq G CG g yCg g CQ g C #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################