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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:10:03 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Clp_N.html
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#====================================
# Aligned_structures: 2
#   1: 1k6ka.pdb
#   2: 1khya.pdb
#
# Length:        146
# Identity:       28/146 ( 19.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     28/146 ( 19.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/146 ( 13.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1k6ka.pdb               1  -MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSN--PSAREALEACSVDLVALRQE   57
1khya.pdb               1  DRLTNKFQLALADAQSLALGHDNQFIEPLHLS-ALLNQEGGSVSPLLTSAGINAGQLRTD   59
                             L     L L  A   A  H   F    HL  ALL     S    L         LR  

1k6ka.pdb              58  LEAFIEQTTPVLPASEEERDT-QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQ  116
1khya.pdb              60  INQALNRLP-Q----------VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESR  108
                                                 QP     RVL       Q  G N         A     

1k6ka.pdb             117  ESQAAYLLRKHEVSRLDVVNFISHGT  142
1khya.pdb             109  -GTLADILKAAGATTANITQAIEQ--  131
                               A  L             I    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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