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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:50:19 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Cu_amine_oxid.html
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#====================================
# Aligned_structures: 4
# 1: 1a2va.pdb
# 2: 1avk.pdb
# 3: 1ksia.pdb
# 4: 1spua.pdb
#
# Length: 710
# Identity: 61/710 ( 8.6%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 176/710 ( 24.8%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 125/710 ( 17.6%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1a2va.pdb 1 PARP--AHPLDPLSTAEIKAATNTVKSYFA-G--K-KISFNTVTLREPARKAYIQWKEQG 54
1avk.pdb 1 ------ASPFRLASAGEISEVQGILRTAG--LLGP-EKRIAYLGVLDPARGA-------- 43
1ksia.pdb 1 ---V--QHPLDPLTKEEFLAVQTIVQNKYPI--SNNRLAFHYIGLDDPEKDHVLRYETHP 53
1spua.pdb 1 ----KRPHPLNALTADEIKQAVEIVKASA--DFKP-NTRFTEISLLPPDKEAVWAFALEN 53
hPl l Ei iv f l P a
1a2va.pdb 55 -G--P---LPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRAL---ETVQPILTVEDLC 105
1avk.pdb 44 --GSE---AEDRRFRVFIHDVSGARPQEVTVSVTNGTVISAVELDTAATGELPVLEEEFE 98
1ksia.pdb 54 TL--V---SIPRKIFVVAIIN--SQTHEILINLRIRSIVSDNIH-N-GYGFPILSVDEQS 104
1spua.pdb 54 -----KPVDQPRKADVIMLDG--KHIIEAVVDLQNNKLLSWQPI-K-D-AHGMVLLDDFA 103
pR v E v l s
1a2va.pdb 106 STEEVIRNDPAVIEQCVLSGI-PANEMHKVYCDPWTIGYDERW-----GTGKRLQQALVY 159
1avk.pdb 99 VVEQLLATDERWLKALAARNL-D---VSKVRVAPLSAGVFEYAE----ERGRRILRGLAF 150
1ksia.pdb 105 LAIKLPLKYPPFIDSVKKRGL-N---LSEIVCSSFTMGWFGE-E-----KNVRTVRLDCF 154
1spua.pdb 104 SVQNIINNSEEFAAAVKKRGITD---AKKVITTPLTVGYFDG--KDGLKQDARLLKVISY 158
rg kv p t G f R
1a2va.pdb 160 YRSDED-DSQYSHPL-DFCPIVDTEEKKVIFIDIPNRRRKVSK-HKHANFYPKHMIEKVG 216
1avk.pdb 151 VQDFPE-DSAWAHPVDGLVAYVDVVSKEVTRVIDT-GVFPVPA-E-HGNYT--D-PELTG 203
1ksia.pdb 155 MKES--TVNIYVRPITGITIVADLDLMKIVEYHDR-DIEAVPTAE-NTEYQ--V--SKQS 206
1spua.pdb 159 LDVG--DGNYWAHPIENLVAVVDLEQKKIVKIEEG-PVVPVPM-T-ARPFD--G--RDRV 209
hP vD kk Vp
1a2va.pdb 217 -AMRPEAPPINVTQPEGVSFKMT-GNVMEWSNFKFHIGFNYREGIVLSDVSYNDH--GNV 272
1avk.pdb 204 -PLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDG--DRL 260
1ksia.pdb 207 PPFGPKQHSLTSHQPQGPGFQIN-GHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKS 265
1spua.pdb 210 ---APAVKPMQIIEPEGKNYTIT-GDMIHWRNWDFHLSMNSRVGPMISTVTYNDN--GTK 263
p p qPeG f t G W nw fh gf R G v s D
1a2va.pdb 273 RPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHF 332
1avk.pdb 261 RPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVI 320
1ksia.pdb 266 RRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYV 325
1spua.pdb 264 RKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETI 323
R s em VPYgdP k D Geyg G t l g Dc l
1a2va.pdb 333 SDRAGDPITVKNAVCIHEEDDGLLFK-HSD-FR-DNFATSLVTRATKLVVSQIFTAAN-E 388
1avk.pdb 321 SDAFGNPREIRNGICMHEEDWGILAK-HSD-LW-SGI--NYTRRNRRMVISFFTTIGNYD 375
1ksia.pdb 326 HSANGTPILLKNAICVFEQYGNIMWRHTENGIPNE--SIEESRTEVNLIVRTIVTVGN-D 382
1spua.pdb 324 ADYTGVPMEIPRAIAVFERYAGPEYK-HQE-MG----QPNVSTERRELVVRWISTVGN-D 376
d G P naic E g k h lvv i T gN d
1a2va.pdb 389 YCLYWVFMQDGAIRLDIRLTGILNTYILGD---DEE-A------GPWGTRVYPNVNAHNH 438
1avk.pdb 376 YGFYWYLYLDGTIEFEAKATGVVFTSAFPE---GGS---------DNISQLAPGLGAPFH 423
1ksia.pdb 383 NVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKED------LHGKLVSANSIGIYH 436
1spua.pdb 377 YIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDE---TAKDDTRYGTLIDHNIVGTTH 433
y W f G I tGi g n H
1a2va.pdb 439 QHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPEN----MYGNAFYSEKTTFKTVKDSL 494
1avk.pdb 424 QHIFSARLDMAIDGFTNRVEEEDVVRQ--TM-GPGN----ERGNAFSRKRTVLTRESEAV 476
1ksia.pdb 437 DHFYIYYLDFDIDGTHNSFEKTSLKTV--RI-K---DGSSKRKSYWTTETQTAKTESDAK 490
1spua.pdb 434 QHIYNFRLDLDVDGENNSLVAMDPVVK--PN-T---AGGP-RTSTMQVNQYNIGNEQDAA 486
qH rlD iDG Ns d r e da
1a2va.pdb 495 TNYESAT-GRSWDIFNPNKVNPYSGKPPSYKLVST-----QC-PPLLAKEGSLVAKRAPW 547
1avk.pdb 477 READART-GRTWIISNPESKNR-LNEPVGYKLHAH-----NQ-PTLLADPGSSIARRAAF 528
1ksia.pdb 491 ITIG-LA-PAELVVVNPNIKTA-VGNEVGYRLIPA-----IP-AHPLLTEDDYPQIRGAF 541
1spua.pdb 487 QKFD---PGTIRLLSNPNKENR-MGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSF 542
g NPn n g pv Y l l R f
1a2va.pdb 548 ASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHF 607
1avk.pdb 529 ATKDLWVTRYADDERYPTGDFVNQHSGG--AGLPSYIA-QDRDIDGQDIVVWHTFGLTHF 585
1ksia.pdb 542 TNYNVWVTAYNRTEKWAGGLYVDHSRGD--DTLAVWTK-QNREIVNKDIVMWHVVGIHHV 598
1spua.pdb 543 MDKQLWVTRYHPGERFPEGKYPNRSTHD--TGLGQYSK-DNESLDNTDAVVWMTTGTTHV 599
wVt Y e p G v gd gl idn Div wht G tH
1a2va.pdb 608 PAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTT-SEAKRAV-- 654
1avk.pdb 586 PRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPAN--------------- 620
1ksia.pdb 599 PAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPG------C- 641
1spua.pdb 600 ARAEEWPIMPTEWVHTLLKPWNFFDETPTLGAL----------------K 633
p Ed PiMP LrP FF P L
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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