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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:45:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Cyclotide.html
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#====================================
# Aligned_structures: 3
#   1: 1bh4.pdb
#   2: 1df6a.pdb
#   3: 1k48a.pdb
#
# Length:         41
# Identity:        8/ 41 ( 19.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     17/ 41 ( 41.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           22/ 41 ( 53.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bh4.pdb                1  ------CGESCVWIPC--ISAAL-GCSCKNKVCYRNGIP--   30
1df6a.pdb               1  ---------SCVYIPC--TVTALLGCSCSNRVCYNGIPCAE   30
1k48a.pdb               1  NGLPVC-GETCVGGTCNT----P-GCTCSWPVCTR------   29
                                    sCV ipC      l GCsCsn VCyr      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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