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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:45:03 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Cys_Met_Meta_PP.html
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#====================================
# Aligned_structures: 3
#   1: 1cl1a.pdb
#   2: 1cs1a.pdb
#   3: 1qgna.pdb
#
# Length:        426
# Identity:       63/426 ( 14.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    213/426 ( 50.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           69/426 ( 16.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cl1a.pdb               1  -------KLDTQLVNAGRSKKYT-------LGAVNSVIQRASSLVFDSVEAKKHATRN--   44
1cs1a.pdb               1  ------RKQATIAVRSGLN-------DDEQYGCVVPPIHLSSTYNFTGFNE---------   38
1qgna.pdb               1  KYASFLNSDGSVAIHAGE--RLGRGI---VTDAITTPVVNTSAYFFNKTSELIDFKEKRR   55
                                  k  t av aG              gav  pi   S y F    e         

1cl1a.pdb              45  RANG--ELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM  102
1cs1a.pdb              39  ----PRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVA   94
1qgna.pdb              56  -----ASFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVT  110
                                    YgRrGnpT  vlq a  eLEGgag vL   Gm A     laf   Gdh v 

1cl1a.pdb             103  TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQ--PNTKIVFLESPGSITMEVH  160
1cs1a.pdb              95  PHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL-A-EKPKLVLVESPSNPLLRVV  152
1qgna.pdb             111  TTDCYRKTRIFIETILPKMGITATVIDPADVGALELAL-NQKKVNLFFTESPTNPFLRCV  169
                           t dcY  s  f   il k g t    Dp d  al  aL    k klvf ESP np lrvv

1cl1a.pdb             161  DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAAT-YLVGHSDAM-IGTA  218
1cs1a.pdb             153  DIAKICHLARE-VG-AVSVVDNTFLSPALQNPLALGADLVLHSCT-YLNGHSDVVAGVVI  209
1qgna.pdb             170  DIELVSKLCHE-KG-ALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVL-AGCI  226
                           Di  i  l re vg A   iDnTfa p lqkaLalGaDlvlhsaT yL GHsDv   g i

1cl1a.pdb             219  VCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQV  278
1cs1a.pdb             210  AKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLV  269
1qgna.pdb             227  SGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV  286
                                 v elr  a   G    a  aYl  RGlrTL  R  q    al  ae L  hP V

1cl1a.pdb             279  ARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGY  338
1cs1a.pdb             270  KKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDE--QTLRRFLGGLSLFTLAESLGGV  327
1qgna.pdb             287  RHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLL--TTAKFVDALKIPYIAPSFGGC  344
                             vyhP Lp   gHeiakrq tGfgg  SFeldgdl   tla fld lslf  A S GG 

1cl1a.pdb             339  ESLILANQP-EHIAA-----IRPQGEIDFSG------TLIRLHIGLEDVDDLIADLDAGF  386
1cs1a.pdb             328  ESLISHAA-TMTHAGMAPEARA---------AAGISETLLRISTGIEDGEDLIADLENGF  377
1qgna.pdb             345  ESIVDQPA-IMSYWDLSQSDRA---------KYGIMDNLVRFSFGVEDFDDLKADILQAL  394
                           ESli   a  m  a      ra               tL R s G ED dDLiADl  gf

1cl1a.pdb             387  ARIV--  390
1cs1a.pdb             378  RAANKG  383
1qgna.pdb             395  DSI---  397
                             i   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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