################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 01:51:17 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DHHA2.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: 1i74a.pdb # 2: 1k20a.pdb # 3: 1k23a.pdb # # Length: 121 # Identity: 57/121 ( 47.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 109/121 ( 90.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 4/121 ( 3.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1i74a.pdb 1 TNLASKTAAQLVDIDAKTFELNGSQVRVAQVNTVDINEVLERQNEIEEAIKASQAANGYS 60 1k20a.pdb 1 TNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAIEKAIADNGYS 60 1k23a.pdb 1 ADLSKKTVEELISLDAKEFTLGSKKVEIAQVNTVDIEDVKKRQAELEAVISKVVAEKNLD 60 tnLasKtaeeLidiDAKtFeLng VrvAQVNTVDI eVleRQaEiEaaI k A ngys 1i74a.pdb 61 DFVL-ITDILNSNSEILALGNNTDKVEAAFNFTLKNNHAFLAGAVSRKKQVVPQLTESFN 119 1k20a.pdb 61 DFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFN 120 1k23a.pdb 61 LFLLVITDILENDSLALAIGNEAAKVEKAFNVTLENNTALLKGVVSRKKQVVPVLTDA-- 118 dFvL ITDIlnsnSeiLAiGnn dKVEaAFNftLeNNhAfLaGaVSRKKQVVPqLTes 1i74a.pdb 120 G 120 1k20a.pdb 121 A 121 1k23a.pdb - #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################