################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 01:51:28 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DISIN.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: 1fvl.pdb # 2: 1kst.pdb # 3: 2ech.pdb # # Length: 79 # Identity: 13/ 79 ( 16.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 32/ 79 ( 40.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 41/ 79 ( 51.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1fvl.pdb 1 G-EECDCGSPSNPCCDAATCKLRPGAQCADGLCCDQCRFKKKRTICRIAR-GD-F-PDDR 56 1kst.pdb 1 -GKECDCSSPENPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIP--RG-DMPDDR 56 2ech.pdb 1 ------------------------ECESGPC--CRNCKFLKEGTICKRARG-DD--MDDY 31 gaqcg g C qCkF k gtICria d pDDr 1fvl.pdb 57 CTGLSNDCPR-WNDL---- 70 1kst.pdb 57 CTGQSADCPR------YH- 68 2ech.pdb 32 CNGKTCDCPRNPHKGP-AT 49 CtG s DCPR #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################