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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:25:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_ligase_N.html
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#====================================
# Aligned_structures: 2
#   1: 1b04a.pdb
#   2: 1dgta.pdb
#
# Length:        321
# Identity:      127/321 ( 39.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    127/321 ( 39.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           18/321 (  5.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b04a.pdb               1  -DRQQAERRAAELRELLNRYGYEYYVLDRPSVP-DAEYDRLMQELIAIEEQYPELKTSDS   58
1dgta.pdb               1  MTREEARRRINELRDLIRYHNYRYYVLADP-EISDAEYDRLLRELKELEERFPEFKSPDS   59
                             R  A RR  ELR L     Y YYVL  P    DAEYDRL  EL   EE  PE K  DS

1b04a.pdb              59  PTQRI--GGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVRQ-EVGEAAYVCELAID  115
1dgta.pdb              60  PTEQVGARPLEP-TFRPVRHPTRMYSLDNAFTYEEVLAFEERLEREAEAPSLYTVEHKV-  117
                           PT            FR V H   M SL NAF       F  R          Y  E    

1b04a.pdb             116  GLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEP-VSLEARGEAFMPKA  174
1dgta.pdb             118  DGLSVLYYEEGVWSTGSGD-G-EVGEEVTQNLLTIPTIPRRLKGVPDRLEVRGEVYMPIE  175
                                  YE G    G        GE  T NL TI   P RLK     LE RGE  MP  

1b04a.pdb             175  SFLRLNEERKAR--ELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADA-E--ALGIA  229
1dgta.pdb             176  AFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGLEESGLK  235
                            FLRLNEE   R    F NPRNAAAGSLRQ DP V A R L    Y L         G  

1b04a.pdb             230  SHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQ  289
1dgta.pdb             236  SQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLW  295
                           S  E L  L   GF V            V          R  LP E DG V K D     

1b04a.pdb             290  RALGATAKSPRWAIAYKFPAE  310
1dgta.pdb             296  GELGYTARAPRFALAYKFP--  314
                             LG TA  PR A AYKFP  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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