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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:38:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DSPc.html
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#====================================
# Aligned_structures: 2
#   1: 1mkp.pdb
#   2: 1vhra.pdb
#
# Length:        186
# Identity:       43/186 ( 23.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/186 ( 23.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           50/186 ( 26.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1mkp.pdb                1  A--------------------SFPVEILPFLYLGCAKDS---TNLDVLEEFGIKYILNVT   37
1vhra.pdb               1  -SVQDLNDLLSDGSGCYSLPSQPCNEVTPRIYVGNA---SVAQDIPKLQKLGITHVLNAA   56
                                                    E  P  Y G A           L   GI   LN  

1mkp.pdb               38  --PNLPNLFENA------GEFKYKQIPISDHWSQNLSQFFPEAISFIDEARGKN-CGVLV   88
1vhra.pdb              57  EGRSF-MHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLV  115
                                                 Y  I   D    NLS  F  A  FID A       VLV

1mkp.pdb               89  HSL-AGISRSVTVTVAYLMQKLNLSMNDAYDIVKMKKSNIS-PNFNFMGQLLDFERTL--  144
1vhra.pdb             116  HCREG-YSRSPTLVIAYLMMRQKMDVKSALSIVRQNREI--GPNDGFLAQLCQLNDRLAK  172
                           H      SRS T   AYLM         A  IV         PN  F  QL      L  

1mkp.pdb                   ------     
1vhra.pdb             173  EGKLKP  178
                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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