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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:38:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DUF28.html
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#====================================
# Aligned_structures: 2
#   1: 1kona.pdb
#   2: 1lfpa.pdb
#
# Length:        263
# Identity:       95/263 ( 36.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     95/263 ( 36.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           52/263 ( 19.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kona.pdb               1  GHSKWANTRHRKA-----------AQDAKRGKIFTKIIRELVTAAKLDA------NPRLR   43
1lfpa.pdb               1  -------------SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLG-GPNPEFNPRLR   46
                                                     DA RGK F K IRE   A  L        NPRLR

1kona.pdb              44  AAVDKALSNNMTRDTLNRAIARG------ANMETIIYEGYGPGGTAIMIECLSDNRNRTV   97
1lfpa.pdb              47  TAIEQAKKAN-PWENIERAIKKGAGELEGEQFEEVIYEGYAPGGVAV-VLATTDNRNRTT  104
                            A   A   N       RAI  G         E  IYEGY PGG A       DNRNRT 

1kona.pdb              98  AEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEK--GDEDTIMEAALEAGAEDVVTYDDG  155
1lfpa.pdb             105  SEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPG-EE  163
                            EVRH F K GGNLG  G V YLF  KG I        E    E A E GAEDV      

1kona.pdb             156  AIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTK-ADMDAETAPKLMRLIDMLEDCD  214
1lfpa.pdb             164  VHIIYTVPEELYEVKENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELD  223
                               YT  EE   V   LE  G     A     P       D ETA K   L   LE  D

1kona.pdb             215  DVQEVYHNGEISDEVAATL----  233
1lfpa.pdb             224  DVQQVIANFEIPEE-----ILQK  241
                           DVQ V  N EI  E         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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