################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Mon Jul 25 15:12:28 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Dehydratase_MU.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1eexb.pdb # 2: 1iwpb.pdb # # Length: 184 # Identity: 109/184 ( 59.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 109/184 ( 59.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 6/184 ( 3.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1eexb.pdb 1 -G-FLTEVGEARQGTQQDEVIIAVGPAFGLAQTVNIVGIPHKSILREVIAGIEEEGIKAR 58 1iwpb.pdb 1 FTLKTREGGVASADERADEVVIGVGPAFDKHQHHTLIDMPHGAILKELIAGVEEEGLHAR 60 E G A DEV I VGPAF Q PH IL E IAG EEEG AR 1eexb.pdb 59 VIRCFKSSDVAFVAVEGNRLSGSGISIGIQSKGTTVIHQQGLPPLSNLELFPQAPLLTLE 118 1iwpb.pdb 61 VVRILRTSDVSFMAWDAANLSGSGIGIGIQSKGTTVIHQRDLLPLSNLELFSQAPLLTLE 120 V R SDV F A LSGSGI IGIQSKGTTVIHQ L PLSNLELF QAPLLTLE 1eexb.pdb 119 TYRQIGKNAARYAKRESPQPVPTLNDQMARPKYQAKSAILHIKETKYVVTGKNPQELRVA 178 1iwpb.pdb 121 TYRQIGKNAARYARKESPSPVPVVNDQMVRPKFMAKAALFHIKETKHVVQDAEPVTLHID 180 TYRQIGKNAARYA ESP PVP NDQM RPK AK A HIKETK VV P L 1eexb.pdb ---- 1iwpb.pdb 181 LVRE 184 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################