################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 19:47:11 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Esterase.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1dqza.pdb # 2: 1f0na.pdb # # Length: 285 # Identity: 201/285 ( 70.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 201/285 ( 70.5%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 6/285 ( 2.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1dqza.pdb 1 -RPGLPVEYLQVPSASMGRDIKVQFQGG---GPHAVYLLDGLRAQDDYNGWDINTPAFEE 56 1f0na.pdb 1 SRPGLPVEYLQVPSPSMGRDIKVQFQSGGNNS-PAVYLLDGLRAQDDYNGWDINTPAFEW 59 RPGLPVEYLQVPS SMGRDIKVQFQ G AVYLLDGLRAQDDYNGWDINTPAFE 1dqza.pdb 57 YYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGN 116 1f0na.pdb 60 YYQSGLSIVMPVGGQSSFYSDWYSPACGKAGCQTYKWETFLTSELPQWLSANRAVKPTGS 119 YYQSGLS MPVGGQSSFY DWY P TYKWETFLT E P WL AN V PTG 1dqza.pdb 117 AAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMW 176 1f0na.pdb 120 AAIGLSMAGSSAMILAAYHPQQFIYAGSLSALLDPSQGMGPSLIGLAMGDAGGYKAADMW 179 AA GLSM G SA ILAAY PQQF YA SLS L PS P LIGLAM D GGY A MW 1dqza.pdb 177 GPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTF 236 1f0na.pdb 180 GPSSDPAWERNDPTQQIPKLVANNTRLWVYCGNGTPNELGGANIPAEFLENFVRSSNLKF 239 GPSSDPAW RNDP QIP LVANNTR WVYCGNGTP LGG NIPA FLE N F 1dqza.pdb 237 RDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG- 280 1f0na.pdb 240 QDAYNAAGGHNAVFNFPPNGTHSWEYWGAQLNAMKGDLQSSLGAG 284 D Y A GG N VFNFPPNGTHSW YW QL AMK D Q L #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################