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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:54:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Fe_Asc_oxidored.html
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#====================================
# Aligned_structures: 2
#   1: 1bk0.pdb
#   2: 1dcs.pdb
#
# Length:        363
# Identity:       54/363 ( 14.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     54/363 ( 14.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          118/363 ( 32.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bk0.pdb                1  SVS--KANVPKIDVSPLF-GDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQ---RLSQ   54
1dcs.pdb                1  ---MDT-TVPTFSLAELQQGL-------HQDEFRRCLRDKGLFYLTDCGLTDTELKSAKD   49
                                   VP      L  G                 RD G FY    G           

1bk0.pdb               55  KTKEFHMSITPEEKWDLAIRAYNKEHQDQV-RAGYYLSIPGKKAVESFCYLNPNFTPDHP  113
1dcs.pdb               50  LVIDFFEHGSEAEKRAVTSPV-------PTMRRGFTGL------SMCYSMGT--A-----   89
                               F       EK                 R G                          

1bk0.pdb              114  RIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEEN---FFA  170
1dcs.pdb               90  ----------DNLFP-S---GDFERIWTQYFDRQYTASRAVAREVLRATGTE--PDGGVE  133
                                      N  P       F     QY       S A       A G E        

1bk0.pdb              171  RHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNV----  226
1dcs.pdb              134  AFL---DCEPLLRFRYFPQ-----------------LRMAPHYDLSMVTLIQQTPCANGF  173
                                 D          P                  L    H D S  T   Q       

1bk0.pdb              227  QNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVN---AERQSLPFF  283
1dcs.pdb              174  VSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPIAGSS-RTSSVFF  232
                             LQ E      D        L  CG      T    KAP H V         R S  FF

1bk0.pdb              284  VNLGYDSVIDPFDPR---EPNGKSD---REPLSYGDYLQNGLVSLINKNGQ-T-------  329
1dcs.pdb              233  LRPNADFTFSV----PLARECGFDVSLDGETATFQDWIG------------GNYVNIRRT  276
                                D               G       E     D                        

1bk0.pdb                   ---     
1dcs.pdb              277  SKA  279
                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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