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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:55:31 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Fe_hyd_lg_C.html
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#====================================
# Aligned_structures: 2
#   1: 1feha.pdb
#   2: 1hfel.pdb
#
# Length:        412
# Identity:      164/412 ( 39.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    164/412 ( 39.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/412 (  9.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1feha.pdb               1  KDK----TEY-VDERS-----------KSLTVDRTKCLLCGRCVNACGKNTETYAMKFLN   44
1hfel.pdb               1  ---SRTVMERIEYEMHTPDPKADPDKLHFVQIDEAKCIGCDTCSQYC---P-TAAIFG-E   52
                                   E    E                  D  KC  C  C   C     T A     

1feha.pdb              45  KNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALS-EKSHMDRVKNALNAPEKHVIVAM  103
1hfel.pdb              53  M-GEPH----SIPH--IEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDGKVKCIAMP  105
                             G                C  CGQC   CP  A     S    V   L       I   

1feha.pdb             104  APSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIEN  163
1hfel.pdb             106  APAVRYALGDAFGMPVGSVTTGKMLAALQKLGFAHCWDTEFTADVTIWEEGSEFVERLTK  165
                           AP VR   G  F M  G   TGK   AL  LGF    D  F AD TI EE  E V R   

1feha.pdb             164  NG---PFPMFTSCCPGWVRQAENYYPELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKN  220
1hfel.pdb             166  -KSDMPLPQFTSCCPGWQKYAETYYPELLPHFSTCKSPIGMNGALAKTYGAERMKYDPKQ  224
                                P P FTSCCPGW   AE YYPELL   S  KSP    G   KTY       DPK 

1feha.pdb             221  VFTVTVMPCTSKKFEADRPQMEKDGLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPA  280
1hfel.pdb             225  VYTVSIMPCIAKKYEGLRPELKSSGMRDIDATLTTRELAYMIKKAGIDFAKLPDGKRDSL  284
                           V TV  MPC  KK E  RP     G RDIDA  TTRELA MIK A I FAKL D   D  

1feha.pdb             281  MGEYSGAGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVRGLNGIKEAEVEINNNKY  340
1hfel.pdb             285  MGESTGGATIFGVTGGVMEAALRFAYEAVTGKKPDSWDFKAVRGLDGIKEATVNVGGTDV  344
                           MGE  G   IFG TGGVMEAALR A              K VRGL GIKEA V       

1feha.pdb             341  NVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPK---  389
1hfel.pdb             345  KVAVVHGAKRFKQVCDDVKAGKSPYHFIEYMACPGGCVCGGGQPVMPGVLEA  396
                            VAV  GA                YHFIE MAC GGCV GGGQP        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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