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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:07:01 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Fork_head.html
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#====================================
# Aligned_structures: 3
#   1: 1d5va.pdb
#   2: 1e17a.pdb
#   3: 2hfh.pdb
#
# Length:        120
# Identity:       27/120 ( 22.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     67/120 ( 55.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           43/120 ( 35.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d5va.pdb               1  -ML----VKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYREN-----KQGWQN   50
1e17a.pdb               1  ---SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKN   57
2hfh.pdb                1  M------VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREK-----FPAWQN   49
                                  vkppySYiaLItmAI  aPeKklTL gIyefi  rfPyyrek       gWqN

1d5va.pdb              51  SIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL----------------   94
1e17a.pdb              58  SIRHNLSLHSKFIKVHNE-ATG-KSSWWMLN-------------P------------EGG   90
2hfh.pdb               50  SIRHNLSLNDCFVKIPREPGNPGKGNYWTLD-------------PQSEDMFDNGSFL---   93
                           SIRHNLSLn cFvKvpre   p KgsyWtLd                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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