################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 20:00:46 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/G6PD.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1dpga.pdb # 2: 1qkia.pdb # # Length: 208 # Identity: 55/208 ( 26.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 55/208 ( 26.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 31/208 ( 14.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1dpga.pdb 1 V---SEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQL 57 1qkia.pdb 1 -VCHQSDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTV--ADIR 57 G GDLAK K YP L G L IVG AR L 1dpga.pdb 58 VRDCIKDFTD------DQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDI--- 108 1qkia.pdb 58 KQSEPF----FKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALH-----LGS 108 E F SY A DAASY L 1dpga.pdb 109 DGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAF 168 1qkia.pdb 109 QANRLFYLALPPTVYEAVTKNIHE-SCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLF 167 NR FY P K G NR EKPFG L N F 1dpga.pdb 169 DDNQLFRIDHYLGEPYERMIHDTMNGD- 195 1qkia.pdb 168 REDQIYRI-----DAYERLILDVFCGSQ 190 Q RI YER I D G #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################