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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:29:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GP41.html
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#====================================
# Aligned_structures: 2
#   1: 1df4a.pdb
#   2: 1qcea.pdb
#
# Length:        124
# Identity:       28/124 ( 22.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     28/124 ( 22.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           68/124 ( 54.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1df4a.pdb               1  ---------IVQQQNNLLRAIEAQQHLLQLTVWGIKQLQAG-------------------   32
1qcea.pdb               1  AQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQT-RVTAIEKYLKDQAQLNAWG   59
                                    IVQQQ  LL     QQ LL LTVWG K LQ                     

1df4a.pdb              33  -------------------------GWMEWDREINNYTSLIHSLIEESQN----------   57
1qcea.pdb              60  AAFRQVAHTTVPWPNASLTPKWNNETWQEWERKVDFLEENITALLEEAQIQQEKNMYELQ  119
                                                     W EW R        I  L EE Q           

1df4a.pdb                  ----     
1qcea.pdb             120  KLNS  123
                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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