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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:22:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GSH_synthase_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1m0wa.pdb
#   2: 2hgsa.pdb
#
# Length:        502
# Identity:      164/502 ( 32.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    164/502 ( 32.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           51/502 ( 10.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1m0wa.pdb               1  -------PSKDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASVSPVTIYPTPIPRKCF   53
2hgsa.pdb               1  TNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALL   60
                                    K QL EL       A   G               S  P T  P   P    

1m0wa.pdb              54  DEAVQIQPVFNELYARITQDMAQPDSYLHKTTEALALSDSEFTGKLWSLYLATLKSAQYK  113
2hgsa.pdb              61  EQAYAVQMDFNLLVDAVSQNA---AF-LEQTLSSTIKQDD-FTARLFDIHKQVLKE---G  112
                             A   Q  FN L     Q        L  T       D  FT  L       LK     

1m0wa.pdb             114  -KQNFRLGIFRSDYLIDKK-KGTEQIKQVEFNTVSVSFAGLSEKVDRLHSYLNRA-NKYD  170
2hgsa.pdb             113  IAQTVFLGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAVHRHVLSVLSKT-  171
                             Q   LG  RSDY       G    KQ E NT S SF GL       H        K  

1m0wa.pdb             171  PKGPIYNDQNMVISDSGYLLSKALAKAVESYKSQQS--DPIVAFIVQRNERNVFDQKVLE  228
2hgsa.pdb             172  -----KEAGKILSNNPSKGLALGIAKAWELYG----SPNALVLLIAQEKERNIFDQRAIE  222
                                              L    AKA E Y          V  I Q  ERN FDQ   E

1m0wa.pdb             229  LNLLEKFGTKSVRLTFDDVNDKLFIDDKTGKLFIRDTEQEIAVVYYRTGYTTTDYTSEKD  288
2hgsa.pdb             223  NELLA-RNIHVIRRTFEDISEKGSLDQD-RRLFV--DGQEIAVVYFRDGYMPRQY-SLQN  277
                             LL        R TF D   K   D     LF     QEIAVVY R GY    Y S   

1m0wa.pdb             289  WEARLFLEKSFAIKAPDLLTQLSGSKKIQQLLTDEGVLGKYIS-DAEKKSSLLKTFVKIY  347
2hgsa.pdb             278  WEARLLLERSHAAKCPDIATQLAGTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLY  337
                           WEARL LE S A K PD  TQL G KK QQ L   G L        E    L  TF   Y

1m0wa.pdb             348  PLDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKENIPNFLKGI--EERHWDAYILM  405
2hgsa.pdb             338  SLDVGEEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKDS-EERASYILM  396
                            LD    G      AL  PS  VLKPQREGGGNN Y E     LK           YILM

1m0wa.pdb             406  ELIEPELNENNIILRD-NKSYNEPIISELGIYGCVLFNDEQVLSNEFSGSLLRSKFNTSN  464
2hgsa.pdb             397  EKIEPEPFENCL-LRPGSPARVVQCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAI---  452
                           E IEPE  EN   LR          ISELGI G           N   G LLR K     

1m0wa.pdb             465  EG-GVAAG----FGCLDSIILY  481
2hgsa.pdb             453  --EHADGGVAAGVAVLDNPYPV  472
                                  G       LD     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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