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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:35:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/HMG-CoA_red.html
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#====================================
# Aligned_structures: 2
#   1: 1dqaa.pdb
#   2: 1qaya.pdb
#
# Length:        465
# Identity:       62/465 ( 13.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     62/465 ( 13.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          137/465 ( 29.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dqaa.pdb               1  LSDAEI---IQLVNAKHI-----PAYKLETLIE--THERGVSIRRQLLSKKLSEPSSLQY   50
1qaya.pdb               1  ------DSRLPAFRNL--SPAARLDHIGQLLGLSHDDVSLLANA-------------GAL   39
                                                         L                             

1dqaa.pdb              51  LPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCR  110
1qaya.pdb              40  ------PMDIAN-GMIENVIGTFELPYAVASNFQINGRDVLVPLVVEEPSIVAAASYMAK   92
                                           ENVIG    P  VA           VP    E   VA       

1dqaa.pdb             111  AIGLGGGASSRVLADGMTRGPVVRL-PRACDSAEVKAWLETSEGFAVIKEAFDSTSR-FA  168
1qaya.pdb              93  LARANGGFTTSSSAPLMHAQVQIVGIQ---DPLNARLSLLR--RKDEIIELANRKDQLL-  146
                                GG      A  M             D       L        I E          

1dqaa.pdb             169  -----RLQKLHTSIAG-----RNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQ  218
1qaya.pdb             147  NSLGGGCRDIEVHTFADTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQ-  205
                                                  L         DAMG N      E              

1dqaa.pdb             219  ILAVSGNYCTDK--KPAAINWIEGRGKSVVCEAVIPAKVVREVLKT--------TTEAMI  268
1qaya.pdb             206  VRLRI-------LSNLADL-------RLARAQVRITPQQLE-----TAEFSGEAVIEGIL  246
                                           A                 I                     E   

1dqaa.pdb             269  EVNINKNLVGSAMAGSIGGYNA---------HAANIVTAIYIACGQDAAQNV-GSSNC--  316
1qaya.pdb             247  DAYAFAAVD-------------PYRAATHNKGIMNGIDPLIVATGNDWRAVEAGAHA-YA  292
                                                             N       A G D      G      

1dqaa.pdb             317  --------ITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNL-LPQQACLQMLGVQGACK  367
1qaya.pdb             293  CRSGHYGSLTTWEKDN--NGHL-VGTLEMPMPVGLVGGATKTHPLAQLSLRILG-V----  344
                                    T  E     N  L           G VGG T      Q  L  LG      

1dqaa.pdb             368  DNPGE-NARQLARIVCGTVMAGELSLMAALAAGHLVKSHMIHN--  409
1qaya.pdb             345  -----KTAQALAEIAVAVGLAQNLGAMRALATEGIQRGHMALHAR  384
                                  A  LA I      A  L  M ALA       HM     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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