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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:34:46 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/His_biosynth.html
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#====================================
# Aligned_structures: 2
#   1: 1qo2a.pdb
#   2: 1thfd.pdb
#
# Length:        282
# Identity:       43/282 ( 15.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/282 ( 15.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           73/282 ( 25.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1qo2a.pdb               1  ----LVVPAIDLFRGKVARIKGRKENTIFYE-----KDPVELVEKLIEEGFTLIHVVDLS   51
1thfd.pdb               1  MLAKRIIACLDVKDGRVVK-------GSNFENLRDSGDPVELGKFYSEIGIDELVFLDIT   53
                                     D   G V             E      DPVEL     E G       D  

1qo2a.pdb              52  NAIEN----SGENLPVLEKLSEFAE--HIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE  105
1thfd.pdb              54  A----SVEKRKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINTAAVE  108
                                        L   EK  E         GGGI     A  L   G           E

1qo2a.pdb             106  DPSFLKSLREIDV---EPVFSLDTRG----GRVAFKGWLA-EEE---IDPVSLLKRLKEY  154
1thfd.pdb             109  NPSLITQIAQTF-GSQAVVVAIDAKRVDGEFMVFTY----SGKKNTGILLRDWVVEVEKR  163
                            PS               V   D         V              I            

1qo2a.pdb             155  GLEEIVHTEIEKD-GTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNG  213
1thfd.pdb             164  GAGEILLTSIDRDGTK-SGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG-----  217
                           G  EI  T I  D       D                A GG         A         

1qo2a.pdb             214  LLKGVIVGRAFLEGILTVEVKRYAR-----------------  238
1thfd.pdb             218  -ADAALAASVFHFREIDVRE-----LKEYLKKHGVNVRLEGL  253
                                     F      V                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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