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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:35:14 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Histidine_kinase.html
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#====================================
# Aligned_structures: 2
#   1: 1b3qa.pdb
#   2: 1bxda.pdb
#
# Length:        219
# Identity:       27/219 ( 12.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     27/219 ( 12.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          102/219 ( 46.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b3qa.pdb               1  MV----------PISFVFNRFPRMVRDLAKKMNK-EVNFIMRG-EDT-ELDRTFVEEIGE   47
1bxda.pdb               1  --TGQEMPMEMADLNAVLGEVIAAESG-------YEREIETALYPGSIEVKM-HPLSIKR   50
                                           V                  E            E        I  

1b3qa.pdb              48  PLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR  107
1bxda.pdb              51  AVANMVVNAARYGN--------------GWIKVSSGTEPNRAWFQVEDDGPGIA------   90
                                  NA   G               G    S   E N     VEDDG GI       

1b3qa.pdb             108  KAIEKGLIDESKAATLSDQEILNFLFVPGFSGVGM--------------------DVVKN  147
1bxda.pdb              91  ------------------PEQRKHL----------FQPFVRGDSARTISGTGLGLAIVQR  122
                                              E    L                                V  

1b3qa.pdb             148  VVESLNGSMGIESEKDKGTKVTIRLPLT-----------  175
1bxda.pdb             123  IVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTKEG  161
                            V   NG          G      LP             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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