################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 02:35:56 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Huristasin.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: 1bx7.pdb # 2: 1skz1.pdb # 3: 1skz2.pdb # # Length: 69 # Identity: 10/ 69 ( 14.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 22/ 69 ( 31.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 32/ 69 ( 46.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1bx7.pdb 1 GNT-CGGE--TCSAAQVCLK-----------GKCVCN-EVHCRIRCKYGLKKDENGCEYP 45 1skz1.pdb 1 ---GCEEA--GCPEGS---------ACNIITDRCTCS-GVRCRVHCPHGFQRSRYGCEFC 45 1skz2.pdb 1 --------KATCDISE----CPEGMMCSRLTNKCDCKIDINCRKTCPNGLKRDKLGCEYC 48 tC kC C v CR Cp Glkrd GCEyc 1bx7.pdb 46 CSCAK-A-- 51 1skz1.pdb 46 KC-R-LEPM 52 1skz2.pdb 49 EC-R-P--- 52 c r #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################