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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:50:04 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ISP.html
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#====================================
# Aligned_structures: 2
#   1: 1rfs.pdb
#   2: 1rie.pdb
#
# Length:        157
# Identity:       29/157 ( 18.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     29/157 ( 18.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           60/157 ( 38.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1rfs.pdb                1  TIAKDAL-GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVES-----------------   42
1rie.pdb                1  -------AMSKIEI--KLSDIPEGKNMAFKW-RGKPLFVRHRTKKEIDQEAAVEVSQLRD   50
                                            L     G         G P                        

1rfs.pdb               43  ---------DKTLATFGINAVCTHLGCVVPF-NAAENKFICPCHGSQYNNQGRVVRGPAP   92
1rie.pdb               51  PQHDLERVKKPEW--VILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAP  108
                                               VCTHLGCV            CPCHGS Y   GR   GPAP

1rfs.pdb               93  LSLALAHCDV-DDGKVVFVPWTETDFRTGEAPWWSA-  127
1rie.pdb              109  LNLEVPSYEFTSDDMVIV------------------G  127
                           L L         D  V                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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