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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:25:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Inos-1-P_synth.html
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#====================================
# Aligned_structures: 2
#   1: 1gr0a.pdb
#   2: 1jkia.pdb
#
# Length:        553
# Identity:       60/553 ( 10.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     60/553 ( 10.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          253/553 ( 45.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gr0a.pdb               1  -------------------------------------------------------TEVRV    5
1jkia.pdb               1  ITSVKVVTDKCTYKDNELLTKYSYENAVVTKTASGRFDVTPTVQDYVFKLDLKKPEKLGI   60
                                                                                       

1gr0a.pdb               6  AIVGV-GNCASSLVQGVEYYYNADDTST----------VPGLMHV-------RFG-----   42
1jkia.pdb              61  MLIGLGGNNGSTLVASVLANKHNVEF--QTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDV  118
                              G  GN  S LV  V                       G M                 

1gr0a.pdb              43  ---------PYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENN-TIKIADVAP-------   85
1jkia.pdb             119  YAPFNSLLPMVSPNDFVVSGW-DINNA----DLYEAMQR--SQVLEYD-----LQQRLKA  166
                                         D       D        DL  A                        

1gr0a.pdb              86  --TNVIVQRGPTL--DGIGKYYADTIELSDA-----------EPV-------DVVQALKE  123
1jkia.pdb             167  KMSLVKPLPSIYYPDF-IAANQDERAN----NCINLDEKGNVTTRGKWTHLQRIRRDIQN  221
                               V            I                                          

1gr0a.pdb             124  AKV-------DVLVSYLPVGSE---------------------------EADKFYAQCAI  149
1jkia.pdb             222  FK-EENALDKVIVLWTANTE--RYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASI  278
                            K                                                     A   I

1gr0a.pdb             150  DAGVAFVNALPVFIASDPVWAKKFTDARVPIVGDDIKSQVGATITHRVLAKLFEDRGVQL  209
1jkia.pdb             279  LEGVPYINGSPQNTF-VPGLVQLAEHEGTFIAGDDLKS--GQTKLKSVLAQFLVDAGIKP  335
                             GV   N  P      P            I GDD KS  G T    VLA    D G   

1gr0a.pdb             210  DRTMQLNVGGNMDFLNMLE----------------------------------DVHIGPS  235
1jkia.pdb             336  VSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKLGKKVDHCIV-I  394
                                 N  GN D  N                                     D  I   

1gr0a.pdb             236  DHVGWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDAVRAAKIAKDRG--  293
1jkia.pdb             395  KYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCEDSLLATPLIIDLLVMTEFCT-RVSY  453
                                  D K A                       DS      IID          R   

1gr0a.pdb             294  ---------------IGGPVIPASAYLMKSPP------EQLPDDIARAQLEEFIIG----  328
1jkia.pdb             454  KKVDPVKEDAGKFENFYPVLTF-LSYWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGL  512
                                                    Y  K P               R  LE F       

1gr0a.pdb                  -------------     
1jkia.pdb             513  PSQNELRFEERLL  525
                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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