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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:52:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/KSI.html
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#====================================
# Aligned_structures: 2
#   1: 1opy.pdb
#   2: 8cho.pdb
#
# Length:        127
# Identity:       41/127 ( 32.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     41/127 ( 32.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            6/127 (  4.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1opy.pdb                1  NLPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGL   60
8cho.pdb                1  -MNTPEHMTAVVQRYVAALNAGDLDGIVALFADDATVEDPVGSEPRSGTAAIREFYANSL   59
                              T         RY      GD   IV   ADDATVEDP G  P  G   I  FY   L

1opy.pdb               61  --KVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSE  118
8cho.pdb               60  KLPLAVELTQEVRA-VANEAAFAFIVSFEYQGRKTVVAPIDHFRFNGAGKVVSMRALFGE  118
                                  LT  VRA      A  F V     G       ID  RF   G    M A   E

1opy.pdb              119  VNLSV--  123
8cho.pdb              119  KNIHAGA  125
                            N     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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