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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:58:01 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/LRR.html
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#====================================
# Aligned_structures: 3
#   1: 1a4ya.pdb
#   2: 1yrga.pdb
#   3: 2bnh.pdb
#
# Length:        495
# Identity:       53/495 ( 10.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    258/495 ( 52.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          187/495 ( 37.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a4ya.pdb               1  SLDIQSLDIQCEELSD--A------RWAELLPLL-QQCQVVRLDDCGLTEARCKDISSAL   51
1yrga.pdb               1  ----ARFSIEGKSLKLDAITTEDEKSVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENI   55
2bnh.pdb                1  ----MNLDIHCEQLSD--A------RWTELLPLL-QQYEVVRLDDCGLTEEHCKDIGSAL   47
                                 ldI ce Lsd  a      rw elLp l qq  vvrLddcgltee ckdissal

1a4ya.pdb              52  RVNPALAELNLRSNEL-------GDVGVHCVLQGLQTPSC-KIQKLSLQNCCLTGAGCGV  103
1yrga.pdb              56  ASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLK--CPKLHTVRLSDNAFGPTAQEP  112
2bnh.pdb               48  RANPSLTELCLRTNEL-------GDAGVHLVLQGLQSPTC-KIQKLSLQNCSLTEAGCGV   99
                           r np L el lr ne        gd gvhlvLQgLq   C KiqklsLqnc lt agcgv

1a4ya.pdb             104  LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR-----------LEKLQLEYCS  152
1yrga.pdb             113  LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL---AVNKKAKNAPPLRSIICGRNR  169
2bnh.pdb              100  LPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCH-----------LEKLQLEYCR  148
                           L stLr lptL eLhLsdN LGdagl llcegLldp              Leklqleycr

1a4ya.pdb             153  LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  212
1yrga.pdb             170  LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH  229
2bnh.pdb              149  LTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTP  208
                           L aaSceplAsvlra r lkeltvsnNdI eaG rvL qgl ds cqLe L Le cg T 

1a4ya.pdb             213  DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP-SSRLRTLWIWECGITAKG  271
1yrga.pdb             230  LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL-----------  278
2bnh.pdb              209  ANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSP-ASRLKTLWLWECDITASG  267
                            nc dLcgivaS asLREL Lgsn Lgd G Aelcpgll p  srL TL           

1a4ya.pdb             272  CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  331
1yrga.pdb             279  -----------------RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS------  315
2bnh.pdb              268  CRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQH  327
                                            sLagNelgdegaRlLce llepgcqLesLwvkscsft      

1a4ya.pdb             332  FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391
1yrga.pdb                  ------------------------------------------------------------     
2bnh.pdb              328  VSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLAS  387
                                                                                       

1a4ya.pdb             392  TLLANHSLRELDLSNNCLGDAG--ILQLVESVRQP----GCLLEQLVLYDIYWSEEMEDR  445
1yrga.pdb             316  ----------------------EEDDVVDEIREVFSTRGRG-EL-DELDDME--------  343
2bnh.pdb              388  LLLANRSLRELDLSNNCVGDPG--VLQLLGSLEQP----GCALEQLVLYDTYWTEEVEDR  441
                                                    lql es eqp    gc le lvLyD y        

1a4ya.pdb             446  LQALEKDKPSLRVIS  460
1yrga.pdb                  ---------------     
2bnh.pdb              442  LQALEGSKPGLRVIS  456
                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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