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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:02:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Lyase_8_N.html
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#====================================
# Aligned_structures: 2
#   1: 1cb8a.pdb
#   2: 1egua.pdb
#
# Length:        382
# Identity:       55/382 ( 14.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     55/382 ( 14.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           86/382 ( 22.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cb8a.pdb               1  -GTAELIMKRVMLDLKKPL----------------RNMDKVAEKNLNTLQPDG-----SW   38
1egua.pdb               1  KDTYTDRLDDWNGIIA---GNQYYDSKNDQMAKLNQELEGKVADSLSSISSQ-ADRIYLW   56
                             T                                          L             W

1cb8a.pdb              39  KDVP-YKDDAMTNWLPNNHLLQLETIIQAYIEKDSHYYGDDKVFDQISKAFKYWYDS-D-   95
1egua.pdb              57  EKFSNYKTS----ANLTATYRKLEEMAKQVTNPSSRYYQDETVVRTVRDSMEWMHKHVYN  112
                                YK               LE          S YY D  V                 

1cb8a.pdb              96  ---PKSRNWWHNEIATPQALGEMLILMRYGKKPLDEALVHKLTERMKR---GEPE-----  144
1egua.pdb             113  SEKSIVGNWWDYEIGTPRAINNTLSLMKEY---FSDEEIKKYTDVIEKFVPDPE-HFRKT  168
                                  NWW  EI TP A    L LM             K T                 

1cb8a.pdb             145  -----KKTGANKTDIALHYFYRALLTSDEALLSFAVKELFYPVQFVHYEEGLQYDYSYLQ  199
1egua.pdb             169  TDNPFKALGGNLVDMGRVKVIAGLLRKDDQEISSTIRSIEQVFKLVDQGEGFYQDGSYID  228
                                K  G N  D         LL  D    S            V   EG   D SY  

1cb8a.pdb             200  HGPQLQISSYGAVFITGVLKLANYVRDTPYALSTEKLAIFSKYYRDSYLKAIRGSYMDFN  259
1egua.pdb             229  HTNVAYTGAYGNVLIDGLSQLLPVIQKTKNPIDKDKMQTMYHWIDKSFAPLLVNGELMDM  288
                           H        YG V I G   L      T       K          S             

1cb8a.pdb             260  VEGRGVSRPDIL--NKK---AEKKRLLVAKMIDLK-HTEEWADAIARTDS----------  303
1egua.pdb             289  SRGRSISRAN--SEGHVAAVEVLRGIHRIADMSEGETKQRLQSLVKTIVQSDSYYDVFKN  346
                             GR  SR                                                    

1cb8a.pdb             304  -------------TVAAGYK--  310
1egua.pdb             347  LKTYKDISLMQSLLSDAGVASV  368
                                           AG    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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