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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:09:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/LysR_substrate.html
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#====================================
# Aligned_structures: 2
#   1: 1al3.pdb
#   2: 1i6aa.pdb
#
# Length:        256
# Identity:       39/256 ( 15.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     39/256 ( 15.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           63/256 ( 24.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1al3.pdb                1  TWP--DKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADF   58
1i6aa.pdb               1  ---ETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDA   57
                                  G L      T   Y LP  I       P      H     Q       G  D 

1al3.pdb               59  AIATEAL--HLYDDLVMLPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTG  116
1i6aa.pdb              58  VILAL-VKESEA--FIEVPLFDEPMLLAIYEDHPWANREAVPMADLAGEKLLMLEDGHCL  114
                            I                P             HP A    V    LA   L     G   

1al3.pdb              117  RSELDTA-FNRAG-----LTPRIVFTA---TDADVIKTYVRLGLGVGVIASMAVDPVSD-  166
1i6aa.pdb             115  -------RDQAMGFCFEAGADEDTH--FRATSLETLRNMVAAGSGITLLPALAVPP---E  162
                                       G                 T        V  G G       AV P    

1al3.pdb              167  ---PDLVKLDANGIF--SHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVVDTAVALRS  221
1i6aa.pdb             163  RKRDGVVYLPAIK--PEPRRTIGLVYRPGSPLRSRYEQLAEAIRA---------------  205
                                 V L A         T     R    LRS                          

1al3.pdb              222  NEDIEAMFKDIKLPEK  237
1i6aa.pdb             206  ---RMDGHFD------  212
                                    D      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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