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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:27:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MAAL_C.html
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#====================================
# Aligned_structures: 2
#   1: 1kd0a.pdb
#   2: 1kkoa.pdb
#
# Length:        251
# Identity:      126/251 ( 50.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    126/251 ( 50.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           20/251 (  8.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kd0a.pdb               1  GAEINAVPVFAQSGDD-RYD-NVDKIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLR   58
1kkoa.pdb               1  PCVPEAIPLFGQS-G-DDRYIAVDKILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLS   58
                                A P F QS         VDKI K  DVLPHALINNVEEKLG KGEKL EYV WL 

1kd0a.pdb              59  DRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAADYIQTLAEAAKPFHLRIEGP-DVED  117
1kkoa.pdb              59  DRILSLRSSPRYHPTLHIDVYGTIGLIFDDPVRCAEYIASLEKEAQGLPLYIEGPVDAGN  118
                           DRI  LR    Y P  HIDVYGTIG  FD     A YI  L   A    L IEGP D   

1kd0a.pdb             118  RQKQ-EARDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHVQIKTPDLGGVNNIA  176
1kkoa.pdb             119  KPDQIRLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHVQIKTPDLGGIHNIV  178
                              Q        EL   G     VADEWCNT  D   FTD    HVQIKTPDLGG  NI 

1kd0a.pdb             177  DAI-YCKANGGAYCGGTCNETNRSAEVTTNIGACGARQ----VLAKPGGVDEG--IVKNE  229
1kkoa.pdb             179  DAVLYCNKHGEAYQGGTCNETEISARTCVHVAL-----AARPRLIKPGGFDEGLNIVFNE  233
                           DA  YC   G AY GGTCNET  SA                  L KPGG DEG  IV NE

1kd0a.pdb             230  NRVLALVGRRK  240
1kkoa.pdb             234  NRTIALLQT--  242
                           NR  AL     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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