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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:14:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MATH.html
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#====================================
# Aligned_structures: 2
#   1: 1f3vb.pdb
#   2: 1flka.pdb
#
# Length:        155
# Identity:       85/155 ( 54.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     85/155 ( 54.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            8/155 (  5.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f3vb.pdb               1  YDGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYK-CLRIYLNGDGTGRGTHLSL   59
1flka.pdb               1  YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSL   60
                           Y GV IWKI D  R  QEAV G      S  FYT   GYK C R YLNGDG G GTHLSL

1f3vb.pdb              60  FFVV-KGPNDALLRWPFNQKVTLL-LDQN-NREHVIDAFRPDVTSSSFQRPVND-NIASG  115
1flka.pdb              61  FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG  120
                           FFV   G  DALL WPF QKVTL   DQ   R H  DAF PD  SSSF  P    NIASG

1f3vb.pdb             116  CPLFCPVSKEAKNSYVRDDAIFIKAIVDLTGL---  147
1flka.pdb             121  CPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLPDP  155
                           CP F          Y  DD IFIK IVD   L   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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