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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:08:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MCR_alpha_NC.html
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#====================================
# Aligned_structures: 3
#   1: 1e6va.pdb
#   2: 1e6ya.pdb
#   3: 1mroa.pdb
#
# Length:        573
# Identity:      295/573 ( 51.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    490/573 ( 85.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           36/573 (  6.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e6va.pdb               1  --------LFMKALKEKFE----------ESPEEKYTKFYIFGGWKQSERKKEFKEWADK   42
1e6ya.pdb               1  --AADIFSKFKKDMEVKFAQEFGSNKQTGGDITDKTAKF-LRLGPEQDPRKVEMIKAGKE   57
1mroa.pdb               1  AD-----KLFINALKKKFE----------ESPEEKKTTFYTLGGWKQSERKTEFVNAGKE   45
                                   lF kalk KFe          espeeK tkF   gGwkQseRK Ef  agke

1e6va.pdb              43  IVEERGVPHYNPDIGV--PLGQRKLMSYQVSGTDVFVEGDDLTFVNNAAMQQMWDDIRRT  100
1e6ya.pdb              58  IAEKRGIAFYNPMMHSGAPLGQRAITPYTISGTDIVCEPDDLHYVNNAAMQQMWDDIRRT  117
1mroa.pdb              46  VAAKRGIPQYNPDIGT--PLGQRVLMPYQVSTTDTYVEGDDLHFVNNAAMQQMWDDIRRT  103
                           iaekRGip YNPdig   PLGQR lmpYqvSgTD  vEgDDLhfVNNAAMQQMWDDIRRT

1e6va.pdb             101  VIVGMDTAHRVLERRLGKEVTPETINEYMETLNHALPGGAVVQEHMVEIHPGLTWDCYAK  160
1e6ya.pdb             118  CIVGLDMAHETLEKRLGKEVTPETINHYLEVLNHAMPGAAVVQEMMVETHPALVDDCYVK  177
1mroa.pdb             104  VIVGLNHAHAVIEKRLGKEVTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVK  163
                           vIVGld AH vlEkRLGKEVTPETInhYlEtlNHAmPGaAVVQEhMVEtHPaLv DcYvK

1e6va.pdb             161  IITGDLELADEIDDKFLIDIEKLFPEEQAEQLIKAIGNRTYQVCRMPTIVGHVCDGATMY  220
1e6ya.pdb             178  VFTGDDALADEIDKQFLIDINKEFSEEQAAQIKASIGKTSWQAIHIPTIVSRTTDGAQTS  237
1mroa.pdb             164  VFTGNDEIADEIDPAFVIDINKQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTS  223
                           vfTGddelADEID  FlIDInK FpEeQAeqlka iG   wQv riPTIVsrtcDGAtts

1e6va.pdb             221  RWAAMQIAMSFICAYKIAAGEAAVSDFAFASKHAEVINMGEMLPARRARGENEPGGVPFG  280
1e6ya.pdb             238  RWAAMQIGMSFISAYAMCAGEAAVADLSFAAK-AALVSMGEMLPAR-ARGPNEPGGLSFG  295
1mroa.pdb             224  RWSAMQIGMSMISAYKQAAGEAATGDFAYAAK-AEVIHMGTYLPVR-ARGENEPGGVPFG  281
                           RWaAMQIgMSfIsAYk aAGEAAv DfafAaK Aevi MGemLPaR ARGeNEPGGvpFG

1e6va.pdb             281  VLADCVQTMRKYPDDPAKVALEVIAAGAMLYDQIWLGSYMSGGVGFTQYATAVYPDNILD  340
1e6ya.pdb             296  HLSDIVQTSRVS-EDPAKIALEVVGAGCMLYDQIWLGSYMSGGVGFTQYATAAYTDDILD  354
1mroa.pdb             282  YLADICQSSRVNYEDPVRVSLDVVATGAMLYDQIWLGSYMSGGVGFTQYATAAYTDNILD  341
                            LaDivQtsRv  eDPakvaLeVvaaGaMLYDQIWLGSYMSGGVGFTQYATAaYtDnILD

1e6va.pdb             341  DYVYYGLEYVEDKYG-I-------AEAEPSMDVVKDVATEVTLYGLEQYERYPAAMETHF  392
1e6ya.pdb             355  NNTYYDVDYINDKYNGAATVGKDNK-VKASLEVVKDIATESTLYGIETYEKFPTALEDHF  413
1mroa.pdb             342  DFTYFGKEYVEDKYG-L-------CEAPNNMDTVLDVATEVTFYGLEQYEEYPALLEDQF  393
                           d tYyg eYveDKYg           a  smdvVkDvATEvTlYGlEqYE yPaalEdhF

1e6va.pdb             393  GGSQRAAVCAAAAGCSTAFATGHAQAGLNGWYLSQILHKEGQGRLGFYGYALQDQCGAAN  452
1e6ya.pdb             414  GGSQRATVLAAAAGVACSLATGNANAGLSGWYLSMYLHKEAWGRLGFF-FDLQDQ-GATN  471
1mroa.pdb             394  GGS-RAAVVAAAAGCSTAFATGNAQTGLSGWYLSMYLHKEQHSRLGFY-YDLQDQ-GASN  450
                           GGS RAaV AAAAGcstafATGnAqaGLsGWYLSmyLHKE  gRLGFy ydLQDQ GA N

1e6va.pdb             453  SLSVRSDEGLPLELRGPNYPNYAMNVGHLGEYAGIVQAAHAARGDAFCVHPVIKVAFADE  512
1e6ya.pdb             472  VLSYQGDEGLPDELRGPNYPNYAMNVGHQGGYAGIAQAAHSGRGDAFTVNPLLKVCFADD  531
1mroa.pdb             451  VFSIRGDEGLPLELRGPNYPNYAMNVGHQGEYAGISQAPHAARGDAFVFNPLVKIAFADD  510
                           vlS rgDEGLPlELRGPNYPNYAMNVGHqGeYAGI QAaHaaRGDAF vnPl KvaFADd

1e6va.pdb             513  NLVFDFTEPRKEFAKGALREFEPAGERDLIVPA  545
1e6ya.pdb             532  LLPFNFAEPRREFGRGAIREFVPAGERSLVIPA  564
1mroa.pdb             511  NLVFDFTNVRGEFAKGALREFEPAGERALITPA  543
                           nLvFdFtepR EFakGAlREFePAGER Li PA


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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