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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:16:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MIF4G.html
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#====================================
# Aligned_structures: 2
#   1: 1h6ka.pdb
#   2: 1hu3a.pdb
#
# Length:        247
# Identity:       24/247 (  9.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     24/247 (  9.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           78/247 ( 31.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1h6ka.pdb               1  ------TEDHLESLICKV-GEKSACSLESNL-----EGLAGVLEADLP---N-YKSKILR   44
1hu3a.pdb               1  SDPENIKTQELFRKVRSILNKLT--------PQFNQLKQVSGLT----VDTEERLKGVID   48
                                     L                               L                 

1h6ka.pdb              45  LLCTVARLLPEKLTIYTTLVGLLNARNY---NFGGEFVEAMIRQLKESLKAN----NYNE   97
1hu3a.pdb              49  LVFEKAIDEPSFSVAYAN-CRCLVTL--KVPNFRKLLLNRCQKEFEKDKA--AKDKARRR  103
                           L    A   P     Y      L        NF                           

1h6ka.pdb              98  AVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKE  157
1hu3a.pdb             104  SIGNIKFIGELFKLKL-TEA-IHDCVVKLLKNH---------DEESLECLCRLLTTIGKD  152
                                 F   L                                          L   GK 

1h6ka.pdb             158  LYE-KKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEY-LDC--LWAQIQKL  213
1hu3a.pdb             153  LDFEKAKP-RDQYFNQ-EKIVKER-K--------------------TSSRIRFLQDVIDL  189
                           L   K     D  F   E   K R K                                 L

1h6ka.pdb             214  KKDRWQE  220
1hu3a.pdb             190  RLCNWVS  196
                               W  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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