################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 07:48:12 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MoCF_biosynth.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: 1di6a.pdb # 2: 1eava.pdb # 3: 1g8la.pdb # 4: 1jlja.pdb # # Length: 212 # Identity: 8/212 ( 3.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 42/212 ( 19.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 94/212 ( 44.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1di6a.pdb 1 -ATLRIGLVSISDR--------------DKGIPALEEWLTSALT---TPFELETRLIPDE 42 1eava.pdb 1 GPEYKVAILTVSDTVSAG-------AGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE 53 1g8la.pdb 1 -RKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLG----CEVINL-GIIRDD 54 1jlja.pdb 1 -HQIRVGVLTVSDSCFRN-------LAEDRSGINLKDLVQDP--SLLGGTISAYKIVPDE 50 rv sD D pDe 1di6a.pdb 43 QAIIEQTLCELVDEMSCHLVLTTGGT-GPARRDVTPDATLAVADREMPGFGEQMRQISLH 101 1eava.pdb 54 VERIKDILQKWSDVDE-DLILTLGGT-GFTPRDVTPEATKKVIERETPGLLFV--QESLK 109 1g8la.pdb 55 PHALRAAFIEADSQADV--VISSGGVSVGEAD-YTKTILEELGEIAFWK----------- 100 1jlja.pdb 51 IEEIKETLIDWCDEKELNLILTTGGT-GFAPRDVTPEATKEVIEREAPGMALAMLMGSLN 109 i l d lt GGt g r vTp at v ere pg 1di6a.pdb 102 FVPTA---I-LSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYC 157 1eava.pdb 110 ITPFA-----LSRSAAGIRGSTLIIN-PGNPNAVAEC-E------------ALLPALKHA 150 1g8la.pdb 101 -----LAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQ---------------LVQPL 140 1jlja.pdb 110 VTPLG---M-LSRPVCGIRGKTLIINLPGSKKGSQECFQ------------FILPALPHA 153 lsr gir li n PG p e 1di6a.pdb 158 IQLLE-GPYVETAPEVVAAFRPKSAR---R-- 183 1eava.pdb 151 LKQ----------------------------- 153 1g8la.pdb 141 LAKLSGNT----------------------AS 150 1jlja.pdb 154 IDLLR-------------DAIVKVKEVHD--- 169 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################