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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:26:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Mur_ligase.html
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#====================================
# Aligned_structures: 2
#   1: 1fgs.pdb
#   2: 1uag.pdb
#
# Length:        305
# Identity:       26/305 (  8.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     26/305 (  8.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          134/305 ( 43.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fgs.pdb                1  MNYTETVAYIHSFPRLAGDHRRILTLLHALG---NPQ--QQGRYIHVTGTNGKGSAANAI   55
1uag.pdb                1  -------------------------------DIELFCREAQAPIVAITGSNGKSTVTTLV   29
                                                                   Q      TG NGK       

1fgs.pdb               56  AHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFN  115
1uag.pdb               30  GEMAKAAGVNVGVGG------------NIGL-----------------------------   48
                                A G  VG                                                

1fgs.pdb              116  VTEFEFITALAYWYFRQRQVDVAVIEVGD----STNVITPVVSVLTEVAL------D-TI  164
1uag.pdb               49  ---PALMLLD-------DECELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGL   98
                                                  V E        T     V      V            

1fgs.pdb              165  TAIAKHKAGIIKRG--IPVVTGNLVPDAAAVVAAKVATT--GSQWLRF-DRDFSVPKAKL  219
1uag.pdb               99  QQYRAAL-RIYE--NAKVCVVNADDALTM----------PIRCVSFGVNMGDYHLN----  141
                                    I         V                               D        

1fgs.pdb              220  HGWGQRFTYEDQDGRISDL--EVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQG  277
1uag.pdb              142  -----ETWLRVKGEKVL-NVKEMKLSGQHNYTNALAALALADAAG----LPRA--SSLKA  189
                                                E  L G     N   A   A         P         

1fgs.pdb              278  LAASH  282
1uag.pdb              190  LTTFT  194
                           L    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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