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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:26:31 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MutS_C.html
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#====================================
# Aligned_structures: 2
#   1: 1e3ma.pdb
#   2: 1ewqa.pdb
#
# Length:        230
# Identity:      104/230 ( 45.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    104/230 ( 45.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           34/230 ( 14.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e3ma.pdb               1  YTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSP-QRRLIITGPNGGKSTY-RQT   58
1ewqa.pdb               1  YVRPRFG--DRLQIRAGRHPVVERRT--EFVPNDLEA--HEL-VLITGPNAGKSTFLRQT   53
                           Y  P F       I  GRHPVVE      F  N L          ITGPN GKST  RQT

1e3ma.pdb              59  ALIAL-AYIGSYVPAQKVEIGPIDRIFTRVG-----FVETETANILHNATEYSLVLDEIG  112
1ewqa.pdb              54  ALIALLAQVGSFVPAEEAHLPLFDGIYTRIGAGKSTFVEEEVALILKEATENSLVLL---  110
                           ALIAL A  GS VPA        D I TR G     FVE E A IL  ATE SLVL    

1e3ma.pdb             113  RG------TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK-EGVANVHLDAL  165
1ewqa.pdb             111  --DEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALG--LPRLKNLHVAAR  165
                                   TS  DG   A A AE L     A TLFATHYFELT L        N H  A 

1e3ma.pdb             166  EHGDTI-AFHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESIS  214
1ewqa.pdb             166  EEAGGLVFYHQVLPGPASKSYGVEVAA-AGLPKEVVARARALLQAAAR--  212
                           E        H V  G ASKSYG  VAA AG PKEV  RAR  L       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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