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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:27:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MutS_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1e3ma.pdb
#   2: 1ewqa.pdb
#
# Length:        816
# Identity:      293/816 ( 35.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    293/816 ( 35.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          121/816 ( 14.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e3ma.pdb               1  SA---------IENFDAHTPQQYLRLKAQHPEILLFYR-GDFYELFYDDAKRASQLLDIS   50
1ewqa.pdb               1  --EGLKGEGPGPLPPLL---QQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLV   55
                                               QQY  L  Q P  LL    GDFYE F  DA R    L   

1e3ma.pdb              51  LTKRGAS-AGEPIPAGIPYHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIV  109
1ewqa.pdb              56  LTHKTS-KD-FTTPAGIPLRAFEAYAERLLK-GFRLAVADQVEPAEEAEGLVRREVTQLL  112
                           LT           PAGIP  A E Y   L   G   A   Q        G V R V    

1e3ma.pdb             110  TPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPADRET-AAELQRTN  168
1ewqa.pdb             113  TPGTLLQESLLPR-EANYLAAIATG-DGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHR  170
                           TPGT   E LL     N LAAI     G G A LD S G F             EL R  

1e3ma.pdb             169  PAELLYAEDFAESLIEGRRG-----------LRRRPLWEFEIDTARQQLNLQFGTRDLVG  217
1ewqa.pdb             171  PAEVLLAPEL----LENG-AFLDEFRKRFPVLSEAPFE--------------PEGE----  207
                           PAE L A        E               L   P                        

1e3ma.pdb             218  FGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSI-TEREQDSI-IDAATRRNLEITQNLA  275
1ewqa.pdb             208  ----GPLALRRARGALLAYAQRTQGGAL-SLQPFRFYDPGAF-RLPEATLRALEVFEPLR  261
                                      A G LL YA  TQ   L                   AT R LE    L 

1e3ma.pdb             276  GGAENTLASVLDCTVTPGS---RLKRWLH-PVRDTRVLLERQQTIGALQ--D-FTAGLQP  328
1ewqa.pdb             262  GQ--DTLFSVLDETRTAP-GRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRR  318
                           G    TL SVLD T T       L  WL  P  D   L  R               G   

1e3ma.pdb             329  VLRQVGDLERILARLALRTARPRDLAR-RHAFQQLPELRAQLE-TVDSAPVQALREKGEF  386
1ewqa.pdb             319  LLYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGL---------PDL  369
                            L    DLER   RL L  A P DL   R   Q LPELRA L   V              

1e3ma.pdb             387  AELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGL  446
1ewqa.pdb             370  SPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGI  429
                             L   LE A    PP  V  GG I  GY   LD  RA       Y   LE RERERTG 

1e3ma.pdb             447  DTLKVGFNAVHGYYIQISRGQSHLAPINY-RRQTLKNAERYIIPELKEYEDKVLTSKGKA  505
1ewqa.pdb             430  PTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE-KEKEREVYRLEALI  488
                            TLKVG NAV GYY    R      P  Y   QTLK   RY  PE KE E  V       

1e3ma.pdb             506  LALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRI  565
1ewqa.pdb             489  RRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFG--DRLQI  546
                              E     E         EAL   A  LAELDV   LAE A    Y  P F       I

1e3ma.pdb             566  TEGRHPVVEQVLNEPFIANPLNLSP-QRRLIITGPNGGKSTY-RQTALIAL-AYIGSYVP  622
1ewqa.pdb             547  RAGRHPVVERRT--EFVPNDLEA--HEL-VLITGPNAGKSTFLRQTALIALLAQVGSFVP  601
                             GRHPVVE      F  N L          ITGPN GKST  RQTALIAL A  GS VP

1e3ma.pdb             623  AQKVEIGPIDRIFTRVG-----FVETETANILHNATEYSLVLDEIGRG------TSTYDG  671
1ewqa.pdb             602  AEEAHLPLFDGIYTRIGAGKSTFVEEEVALILKEATENSLVLL-----DEVGRGTSSLDG  656
                           A        D I TR G     FVE E A IL  ATE SLVL            TS  DG

1e3ma.pdb             672  LSLAWACAENLANKIKALTLFATHYFELTQLPEK-EGVANVHLDALEHGDTI-AFHSVQD  729
1ewqa.pdb             657  VAIATAVAEALHE-RRAYTLFATHYFELTALG--LPRLKNLHVAAREEAGGLVFYHQVLP  713
                              A A AE L     A TLFATHYFELT L        N H  A E        H V  

1e3ma.pdb             730  GAASKSYGLAVAALAGVPKEVIKRARQKLRELESIS  765
1ewqa.pdb             714  GPASKSYGVEVAA-AGLPKEVVARARALLQAAAR--  746
                           G ASKSYG  VAA AG PKEV  RAR  L       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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