################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 21:39:33 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/NMT.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1nmta.pdb # 2: 2nmta.pdb # # Length: 427 # Identity: 219/427 ( 51.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 219/427 ( 51.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 40/427 ( 9.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1nmta.pdb 1 ----------------------EGPIDKLKTPEDVPNDPLPLISDFEWSTLDIDDNLQLD 38 2nmta.pdb 1 AMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLE 60 EGPIDK KTPED PLPL S FEW D D QL 1nmta.pdb 39 ELYKLLYDNYVEDIDATFRFKYSHEFFQWALKPPGWRKDWHVGVRVKSTGKLVAFIAATP 98 2nmta.pdb 61 DVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIP 120 LL NYVED DA FRF Y EFF WALK PGW KDWH GVRVK T KLVAFI A P 1nmta.pdb 99 VTFKLNKSNKVIDSVEINFLCIHKKLRNKRLAPVLIKEITRRVNKQNIWQALYTGGSILP 158 2nmta.pdb 121 VTLGV--RGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLP 178 VT K SVEINFLC HK LR KRL PVLIKEITRRVNK IW ALYT G LP 1nmta.pdb 159 TPLTTCRYQHRPINWSKLHDVGFSHLPPNQTKSSMVASYTLPNNPKLKGLRPMTGKDVST 218 2nmta.pdb 179 APVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQ 238 P TCRY HRP NW KL V F LP T M A LP K GLR D 1nmta.pdb 219 VLSLLYKYQERFDIVQLFTEEEFKHWMLGHDENSDS--NVVKSYVVEDENGIITDYFSYY 276 2nmta.pdb 239 VFELFKRYQSRFELIQIFTKEEFEHNFIGEE-SLPLDKQVIFSYVVEQPDGKITDFFSFY 297 V L YQ RF Q FT EEF H G V SYVVE G ITD FS Y 1nmta.pdb 277 LLPFTVLDNAQHDELGIAYLFYYASDS-FEK----------PNYKKRLNELITDALITSK 325 2nmta.pdb 298 SLPFTILNNTKYKDLGIGYLYYYATDADFQ-FKDRFDPKATKALKTRLCELIYDACILAK 356 LPFT L N LGI YL YYA D F K RL ELI DA I K 1nmta.pdb 326 KFGVDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVVEDQTS 385 2nmta.pdb 357 NANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLN-PDNSNDIKRRS 415 DVFN LT QDNT FL D KFG GDGFLN YLFNYR P GG S 1nmta.pdb 386 GIGVVLL 392 2nmta.pdb 416 NVGVVML 422 GVV L #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################