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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:43:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/NusB.html
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#====================================
# Aligned_structures: 2
#   1: 1ey1a.pdb
#   2: 1eyva.pdb
#
# Length:        154
# Identity:       37/154 ( 24.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     37/154 ( 24.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           38/154 ( 24.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ey1a.pdb               1  MKPAAR--RRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD------------VL   46
1eyva.pdb               1  ------GRHQARKRAVALLFEAEVRGIS----AAEVVDTRA-----ALAEAKPDIARLHP   45
                                     AR  AV  L                                         

1ey1a.pdb              47  YFRELLAGVATNTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAIN  105
1eyva.pdb              46  YTAAVARGVSEHAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVD  105
                           Y      GV    A  D L    L    L  L  V  A LR    EL    DVP  V   

1ey1a.pdb             106  EAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK  139
1eyva.pdb             106  EAVQLAKELSTDDSPGFVNGVLGQVM--------  131
                           EA  LAK     DS  FVNGVL            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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