################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Mon Jul 25 15:29:22 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PARP.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1efya.pdb # 2: 1gs0a.pdb # # Length: 222 # Identity: 113/222 ( 50.9%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 113/222 ( 50.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 12/222 ( 5.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1efya.pdb 1 LRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHN 60 1gs0a.pdb 1 LHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAF-R-EDLPN 58 L D S E K I QY THA TH Y F E EGE L N 1efya.pdb 61 RQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPI 120 1gs0a.pdb 59 RMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNT 118 R LLWHGSR N GILS GLR APPEAP TGYMFGKGIYFADM SKSANYC S 1efya.pdb 121 GLILLGEVALGNMYELKNASHITKL----PKGKHSVKGLGKTAPDPTATTTLDGVEVPLG 176 1gs0a.pdb 119 GLLLLSEVALGQCNELLEANPK---AQGLLRGKHSTKGMGKMAPSPAHFITLNGSTVPLG 175 GL LL EVALG EL A GKHS KG GK AP P TL G VPLG 1efya.pdb 177 NGISTGIND-T--CLLYNEYIVYDVAQVNLKYLLKLKFNYKT 215 1gs0a.pdb 176 PASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFNFLQ 217 TGI L YNE IVY QV YLLK FN #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################