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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:15:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PEP-utilizers_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1h6za.pdb
#   2: 1kbla.pdb
#
# Length:        920
# Identity:      485/920 ( 52.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    485/920 ( 52.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           70/920 (  7.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1h6za.pdb               1  VAKKWVYYFGGGNADGNKNMKELLGGKGANLAEMVNLGIPVPPGFTITTEACKTYQET-E   59
1kbla.pdb               1  --AKWVYKF----EEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGK   54
                              KWVY F      GN  M  LLGGKG NLAEM  LG P P GFT TTEAC  Y     

1h6za.pdb              60  TIPQEVADQVRENVSRVEKEMGAKFGDPANPLLFSVRSGAAAS--------DTVLNLGLN  111
1kbla.pdb              55  QITQEIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSGA---RASMPGMMDTILNLGLN  111
                            I QE  DQ  E     E   G KFGD   PLL SVRSGA           DT LNLGLN

1h6za.pdb             112  KVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEEALSRMKERRGTKFDTDL  171
1kbla.pdb             112  DVAVEGFAKKTG-NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDL  170
                            V V           RF YDSYRRFI MY D VM V    FE     MKE  G  FDTDL

1h6za.pdb             172  TASDLKELCDGYLELFELKT-GCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITG  230
1kbla.pdb             171  TADDLKELAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPG  230
                           TA DLKEL             G  FPQ P  QL  A KAVFRSW NPRA  YRRMN I G

1h6za.pdb             231  LLG-TA-VNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIRTPQ  288
1kbla.pdb             231  --DWGTAVNVQTMVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQ  288
                                  VNVQ MVFGN    S TGVAF R PSTGE    GEYL NAQGEDVVAG RTPQ

1h6za.pdb             289  QINHSLSLRWAKAHGVGEEERRKRYPSMEEAMPENYRLLCDVRKRLENHYRDMQDLEFTV  348
1kbla.pdb             289  PIT-----------------------QLENDMPDCYKQFMDLAMKLEKHFRDMQDMEFTI  325
                            I                          E  MP  Y    D    LE H RDMQD EFT 

1h6za.pdb             349  QDGRLWLLQCRNGKRTIHAAVRIAIDMVNEGLISREEAVLRIDPYQVDHLMHPNLEPGAE  408
1kbla.pdb             326  EEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKSLDQLLHPTFNPAAL  385
                             G L  LQ RNGKRT  AA  IA D V EG I  EEAV RI     D L HP   P A 

1h6za.pdb             409  KANKPIGRGLAASPGAAVGQVVFDAESAKEWSGRGKKVIMVRLETSPEDLAGMDAACGIL  468
1kbla.pdb             386  KAGEVIGSALPASPGAAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEGIL  445
                           KA   IG  L ASPGAA G V F A  AK     G  VI VRLETSPED  GM AA GIL

1h6za.pdb             469  TARGGMTSHAAVVARGMGKCCVSGCGDMVIR--GKSFKLNGSVFREGDYITI--DGSKGL  524
1kbla.pdb             446  TVRGGMTSHAAVVARGMGTCCVSGCGEIKINEEAKTFELGGHTFAEGDYISLDGSTGKIY  505
                           T RGGMTSHAAVVARGMG CCVSGCG   I    K F L G  F EGDYI       K  

1h6za.pdb             525  IYAGKLKLRSPD-LKGSFQTILQWCQEMKRLGVRTNADTPADAAKARSFGAEGVGLCRTE  583
1kbla.pdb             506  KGDIETQEA---SVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCRTE  562
                                          GSF  I  W      L VRTNADTP D   A   GAEG GLCRTE

1h6za.pdb             584  HMFFEGSRINFIREMILADSASGRKAALDKLLPIQRADFVGILRAMRGLPVTIRLLDPPL  643
1kbla.pdb             563  HMFFEADRIMKIRKMILSDSVEAREEALNELIPFQKGDFKAMYKALEGRPMTVRYLDPPL  622
                           HMFFE  RI  IR MIL DS   R  AL  L P Q  DF     A  G P T R LDPPL

1h6za.pdb             644  HEFVPH-D-A-AAQFELAQKLG-MPAEKVRNRVNALHELNPMLGHRGCRLGITYPEIYNM  699
1kbla.pdb             623  HEFVPHTEEEQAELAKNM----GLTLAEVKAKVDELHEFNPMMGHRGCRLAVTYPEIAKM  678
                           HEFVPH     A                V   V  LHE NPM GHRGCRL  TYPEI  M

1h6za.pdb             700  QVRAIIEAAIAVSE-EGSSVIPEIMVPLVGKKEELSLIREEVVKTAEAVITKSGKRVHYT  758
1kbla.pdb             679  QTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVVVEVAEQVKKEKGSDMQYH  738
                           Q RA  EAAI V E  G    PEIM PLVG K EL      VV  AE V    G    Y 

1h6za.pdb             759  VGTMIEVPRAAVTADSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLRHYGNLGIYAQDP  818
1kbla.pdb             739  IGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDP  798
                            GTMIE PRAA TAD IA  A FFSFGTNDLTQM  GFSRDDAG FL  Y    IY  DP

1h6za.pdb             819  FQSIDQEGIGELVRIAVTKGRRVKPMLKMGICGEHGGDPATIGFCHKVGLDYVSCSPFRV  878
1kbla.pdb             799  FARLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSVEFCHKVGLNYVSCSPFRV  858
                           F   DQ G G LV  AV KGR   P LK GICGEHGGDP    FCHKVGL YVSCSPFRV

1h6za.pdb             879  PVAIVAAAHASIKDRRAAMK  898
1kbla.pdb             859  PIARLAAAQAALNN------  872
                           P A  AAA A          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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