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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:04:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PEPCK_ATP.html
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#====================================
# Aligned_structures: 2
#   1: 1ayl.pdb
#   2: 1ii2a.pdb
#
# Length:        559
# Identity:      219/559 ( 39.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    219/559 ( 39.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           64/559 ( 11.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ayl.pdb                1  MRVNNGLTPQELEAYGISDV-HDIVYNPSYDLLYQEELDPSLT-GYERGVLTNLGAVAVD   58
1ii2a.pdb               1  --------------------PPTIHRNLLSPELVQWALK----IE-KDSRLTARGALAVM   35
                                                  I  N     L Q  L            LT  GA AV 

1ayl.pdb               59  TGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSG-KR  117
1ii2a.pdb              36  SYAKTGRSPLDKRIVDTDDVRENVDWG------KVNMKLSEESFARVRKIAKEFLDTREH   89
                               TGRSP DK IV  D  R    W         N  LS E            L     

1ayl.pdb              118  LFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFK-PDFIVMNGAKCT  176
1ii2a.pdb              90  LFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECK  149
                           LFVVD F G     RL VR  T     A F   M I P  EELA F  PD    N   C 

1ayl.pdb              177  NPQ-WKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSA  235
1ii2a.pdb             150  ADPSI--PGLTSTTCVALNFKTREQVILGTEYAGEMKKGILTVMFELMPQMNHLCMHASA  207
                                   GL S   VA N   R Q I GT Y GEMKKG    M  L P      MH SA

1ayl.pdb              236  NVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKE  295
1ii2a.pdb             208  NVGKQGDVTVFFGLSGTGKTTLSADPHRNLIGDDEHVWTDRGVFNIEGGCYAKAIGLNPK  267
                           NVG  GDV VFFGLSGTGKTTLS DP R LIGDDEH W D GVFN EGGCYAK I L   

1ayl.pdb              296  AEPEIYNAIRRDALLENVTVRED-GTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHA  354
1ii2a.pdb             268  TEKDIYDAVRFGAVAENCVLDKRTGEIDFYDESICKNTRVAYPLSHIEGAL-SKAIAGHP  326
                            E  IY A R  A  EN       G IDF D S   NTRV YP  HI         AGH 

1ayl.pdb              355  TKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLA----------PTPTFSACFGAA  404
1ii2a.pdb             327  KNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTANV-PGVEAGGTRTARPIFSSCFGGP  385
                             VIFLT DAFGV PPV RLT  Q    F  G TA               P FS CFG  

1ayl.pdb              405  FLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGT------GKRISIKDTRAIIDAILNGS  458
1ii2a.pdb             386  FLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAG-GRADRGAKRMPLRVTRAIIDAIHDGT  444
                           FL  H T Y E L   MQ       L NTG  G        KR     TRAIIDAI  G 

1ayl.pdb              459  LDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYT-  517
1ii2a.pdb             445  LDRTEYEEYPGWGLHIPKYVAKVPEHLLNPRKAWKDVRQFNETSKELVAMFQESFSARFA  504
                           LD  E    P   L IP     V    L PR       Q  E    L   F   F     

1ayl.pdb              518  DTPAGAALVAAGPKL----  532
1ii2a.pdb             505  AKA-SQEMKSAVPRYVEFA  522
                                     A P      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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