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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:34:55 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/PPTA.html
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#====================================
# Aligned_structures: 2
#   1: 1dcea.pdb
#   2: 1ft1a.pdb
#
# Length:        376
# Identity:       48/376 ( 12.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     48/376 ( 12.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          112/376 ( 29.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dcea.pdb               1  HGRLKVK-TSEEQAEAKRL-----EREQK------------------LKLYQSATQAVFQ   36
1ft1a.pdb               1  -------FLSLDSPTYV--LYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRA   51
                                    S                                                  

1dcea.pdb              37  KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAA-LVKAELGFL   95
1ft1a.pdb              52  VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQ----------KDLQEEMNYI  101
                             Q  E  E    LT      N    T W  RR  L  L                E    

1dcea.pdb              96  ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA  155
1ft1a.pdb             102  IAIIEEQPKNYQVWHHRRVLVEWL--KDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF  159
                                  PK Y  WHHR  L   L       ELE  A  L  D  N H W  R  V    

1dcea.pdb             156  AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL--  213
1ft1a.pdb             160  RLW-DNELQYVDQLLKEDVRNNSVWNQRHFVISNTTG---------------------YS  197
                                 EL   D L      N S W  R                                

1dcea.pdb             214  VQNAFFTDPNDQSAWFYHRWLRCEL--SVEKSTVLQSELESCK-----ELQELEPENKWC  266
1ft1a.pdb             198  DRAVLEREV--QYTLEMIKLV----PHNESAWNYLKGILQDRGLSRYPNLLNQLL--DLQ  249
                                      Q                      L   L          L          

1dcea.pdb             267  LLT-IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL-------  318
1ft1a.pdb             250  PSHSSPYLIAFL---------VDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE  300
                                  L   L                                                

1dcea.pdb             319  ---------KMEYADV  325
1ft1a.pdb             301  YWRYIGRSLQSKHSR-  315
                                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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